View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15589_low_30 (Length: 337)

Name: NF15589_low_30
Description: NF15589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15589_low_30
NF15589_low_30
[»] chr1 (1 HSPs)
chr1 (10-337)||(7816356-7816664)


Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 10 - 337
Target Start/End: Original strand, 7816356 - 7816664
Alignment:
Q  10 atgaacaaaaaggcaacattttaatagtctgccagccttgcatcaacaattgattggtagagttgattaggcagcaaaagagaaggtacattgtcctgta 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  7816356 atgaacaaaaaggcaacattttaatagtctgccagccttgcatcaacaattgattggtagagttgattaggcagcaaaagagaaggtacattgtccggta 7816455  T
Q  110 gaattctaatgttattttgtcttctaataatatatgtatatgtatatattttggtccaaaagaggagaaatgataatgcggtttatattagacagttaaa 209  Q
    ||||||||||||||||| ||||||||||||      |||||||||||||||||||||||||||||  |||             |||||||||||||||||    
T  7816456 gaattctaatgttatttcgtcttctaataa------tatatgtatatattttggtccaaaagaggttaaa-------------tatattagacagttaaa 7816536  T
Q  210 ttttggagttaaatatatctttcttccttgtcaaaaaataaaacttaatattatctaataattggtcaaacgataattctttattactagaaatacgagt 309  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  7816537 ttttggggttaaatatatctttcttccctgtcaaaaaataaaacttaacatgatctaataattggtcaaacgataattctttattgctagaaatatgagt 7816636  T
Q  310 attacgcttctttcaaatacactttata 337  Q
    |||||| |||||||||||||||||||||    
T  7816637 attacgtttctttcaaatacactttata 7816664  T

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