View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15589_low_32 (Length: 329)
Name: NF15589_low_32
Description: NF15589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15589_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 45319737 - 45320057
Alignment:
| Q |
1 |
tttgctcctgattttggcttggcggctatagccttagcaattgttgttttagcttttgccgcttcatatttctgcatgtcatagataagctctttctgca |
100 |
Q |
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||||| |||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45319737 |
tttgcacctgattttggcttggcggctatagcctcagcaactgttgctttagcttttgccgcttcatatttctgcatgtcatagataagctctttctgca |
45319836 |
T |
|
| Q |
101 |
gctgtttatcagcaaccaatatgtcatcaatctcattcttgtagtccttgagaaggacccgaaggcattccatgagagagcctatgaggggactgttctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45319837 |
gctgtttatcagcaaccaatatgtcatcaatctcattcttgtagtccttgagaaggacccgaaggcattccatgagagagcctatgaggggactgttctt |
45319936 |
T |
|
| Q |
201 |
ggtttctaatagacgtttcaactctatgaagatcggtatagtgttttgaatgaggcctttcttgactgcctgagttatagcctttctagttgaagatcca |
300 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45319937 |
ggtttctaatagacatttcaactctatgaagatcggtatagtgttttgaatgaggcctttcttgactgcctgagttatagcctttctagttgaagatcca |
45320036 |
T |
|
| Q |
301 |
ttttctcccccttcttcttct |
321 |
Q |
| |
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||||||||||||||||||||| |
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| T |
45320037 |
ttttctcccccttcttcttct |
45320057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 8 - 321
Target Start/End: Original strand, 14234587 - 14234900
Alignment:
| Q |
8 |
ctgattttggcttggcggctatagccttagcaattgttgttttagcttttgccgcttcatatttctgcatgtcatagataagctctttctgcagctgttt |
107 |
Q |
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||||||||||||||| ||||| ||||| ||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14234587 |
ctgattttggcttggaggctacagcctcagcaactgttgctttagcttttgcagcttcatatttctgcatgtcatagataagctctttctgcagctgttt |
14234686 |
T |
|
| Q |
108 |
atcagcaaccaatatgtcatcaatctcattcttgtagtccttgagaaggacccgaaggcattccatgagagagcctatgaggggactgttcttggtttct |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14234687 |
atcagcaaccaatatgtcatcaatctcattcttgtagtccttgagaaggatccgaaggcattccatgagagagcctatgaggggactgttcttggtttcc |
14234786 |
T |
|
| Q |
208 |
aatagacgtttcaactctatgaagatcggtatagtgttttgaatgaggcctttcttgactgcctgagttatagcctttctagttgaagatccattttctc |
307 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
14234787 |
aatagacgtttcaactctatgaagatgggtatagtgttttgaatgaggcccttcttgactgcctgagttatagcttttctagttgaagatccattttctc |
14234886 |
T |
|
| Q |
308 |
ccccttcttcttct |
321 |
Q |
| |
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| |||||||||||| |
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|
| T |
14234887 |
ctccttcttcttct |
14234900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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