View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15589_low_33 (Length: 328)

Name: NF15589_low_33
Description: NF15589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15589_low_33
NF15589_low_33
[»] chr2 (7 HSPs)
chr2 (1-311)||(2351007-2351317)
chr2 (1-295)||(2303447-2303741)
chr2 (1-290)||(2327007-2327296)
chr2 (1-293)||(2330719-2331011)
chr2 (1-295)||(2321148-2321443)
chr2 (1-311)||(2293818-2294128)
chr2 (1-311)||(2310149-2310459)
[»] chr8 (3 HSPs)
chr8 (1-274)||(41127050-41127323)
chr8 (50-187)||(26506746-26506883)
chr8 (50-162)||(26494726-26494838)


Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 2351317 - 2351007
Alignment:
Q  1 tcatcttgatctctttactccctttaatatcaaaattctcatcgttcaaaaacctttctggcttaaattccattggatcctcccaaacacgaggatccca 100  Q
    ||||||| ||||||||||||||  |||| |||||  | ||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  2351317 tcatctttatctctttactccccgtaatgtcaaatgtttcatccttcaaaaacctctctggcttaaactccattggatcctcccaaacacgaggatccca 2351218  T
Q  101 ccccatctctgccaccataaaattgaccgtcccatttttaggcaccaaataaccattaaaaagcacatcctctgtcaccgcgtgtggtaacacattatgc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  2351217 ccccatctctgccaccataaaattgaccgtcccatttttaggcaccaaataaccgttaaaaagcacatcctctgtcaccgcgtgtggcaacacattatgc 2351118  T
Q  201 cccggtggatgacgcctcaacccttccaaaaccacacatttcagatacaaaagtttctgcaaatcttcctctttcacttccaccttctctccatttccat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2351117 cccggtggatgacgcctcaacccttccaaaaccacacatttcagatacaaaagtttctgcaaatcttcctctttcacttccaccttctctccatttccat 2351018  T
Q  301 catgacccatc 311  Q
    || ||||||||    
T  2351017 cacgacccatc 2351007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 2303741 - 2303447
Alignment:
Q  1 tcatcttgatctctttactccctttaatatcaaaattctcatcgttcaaaaacctttctggcttaaattccattggatcctcccaaacacgaggatccca 100  Q
    ||||||| ||||| ||||||||| |||| |||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2303741 tcatctttatctccttactccctgtaatgtcaaaattctcatccttccaaaacctttctggcttaaactccattggatcctcccaaacacgaggatccca 2303642  T
Q  101 ccccatctctgccaccataaaattgaccgtcccatttttaggcaccaaataaccattaaaaagcacatcctctgtcaccgcgtgtggtaacacattatgc 200  Q
    ||||||||| |||| ||| ||||| ||||||||||||||||||||||||||||| || |||| |||||||||| ||||||||||||| |||| |  ||||    
T  2303641 ccccatctccgccagcatgaaattcaccgtcccatttttaggcaccaaataaccgttcaaaaccacatcctctttcaccgcgtgtggcaacagaaaatgc 2303542  T
Q  201 cccggtggatgacgcctcaacccttccaaaaccacacatttcagatacaaaagtttctgcaaatcttcctctttcacttccaccttctctccatt 295  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||  |||||||||||| |||||||||||||||||| |||||||||||||    
T  2303541 cccggtggatgacgcctcaacccttccaaaacaacacatttcaaataccgaagtttctgcaattcttcctctttcacttcctccttctctccatt 2303447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 2327296 - 2327007
Alignment:
Q  1 tcatcttgatctctttactccctttaatatcaaaattctcatcgttcaaaaacctttctggcttaaattccattggatcctcccaaacacgaggatccca 100  Q
    ||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |    
T  2327296 tcatcttgatctctttactccctgtaatatcaaaagtctcatccttcaaaaacctttctggcttaaactccattggatcctcccaaacacgaggatccaa 2327197  T
Q  101 ccccatctctgccaccataaaattgaccgtcccatttttaggcaccaaataaccattaaaaagcacatcctctgtcaccgcgtgtggtaacacattatgc 200  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||| |||||| ||  |||| || || || ||||||  ||||    
T  2327196 ccccatctctgccaccatgaaattcaccgtcccatttttaggcaccaaataaccattcaaaaccacatcatcgctcactgcatgaggcaacacaaaatgc 2327097  T
Q  201 cccggtggatgacgcctcaacccttccaaaaccacacatttcagatacaaaagtttctgcaaatcttcctctttcacttccaccttctct 290  Q
    || ||||||||||||||||||||||||||||||||||| |||| ||||  |||||| ||||| |||||||||||||||||| ||||||||    
T  2327096 cctggtggatgacgcctcaacccttccaaaaccacacacttcaaataccgaagtttatgcaagtcttcctctttcacttcctccttctct 2327007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 2331011 - 2330719
Alignment:
Q  1 tcatcttgatctctttactccctttaatatcaaaattctcatcgttcaaaaacctttctggcttaaattccattggatcctcccaaacacgaggatccca 100  Q
    ||||||| ||||||||||| ||| |||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  2331011 tcatctttatctctttacttcctgtaatgtcaaaagtctcatccttcaaaaacctttctggcttaaattccattggatcctcccaaacacgagggtccaa 2330912  T
Q  101 ccccatctctgccaccataaaattgaccgtcccatttttaggcaccaaataaccattaaaaagcacatcctctgtcaccgcgtgtggtaacacattatgc 200  Q
    |||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||| |||| |||||||||  |||| ||||| || |||||   ||||    
T  2330911 ccccatctctgcaaccataaaattcaccgtcccatctttaggcaccaaataaccattcaaaaccacatcctcgctcactgcgtgaggcaacacgaaatgc 2330812  T
Q  201 cccggtggatgacgcctcaacccttccaaaaccacacatttcagatacaaaagtttctgcaaatcttcctctttcacttccaccttctctcca 293  Q
    || |||||||||||||||||||||||||||||||| || |||| ||||  |||||| ||||| |||||||||||||||||| |||||||||||    
T  2330811 cctggtggatgacgcctcaacccttccaaaaccacgcacttcaaataccgaagtttatgcaagtcttcctctttcacttcctccttctctcca 2330719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 2321443 - 2321148
Alignment:
Q  1 tcatcttgatctctttactccctttaatatcaaaattctcatcgttcaaaaacctttctggcttaaattccattggatcctcccaaacacgaggatccca 100  Q
    ||||||| ||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2321443 tcatctttatctctttactccctataatatcaaaagtctcatccttcaaaaacctttctggcttaaactccattggatcctcccaaacacgaggatccca 2321344  T
Q  101 ccccatctctgccaccataaaattgaccgtcccatttttaggcaccaaataaccattaaaaagcacatcctctgtcaccgcgtgtggtaacacattatgc 200  Q
    | ||||||| | || ||| ||||| ||||||||||||||||||||||||||||| || |||| |||||||||| |||||| |||||  ||||||  ||||    
T  2321343 cgccatctccgacagcatgaaattcaccgtcccatttttaggcaccaaataaccgttcaaaaccacatcctctttcaccgtgtgtgccaacacaaaatgc 2321244  T
Q  201 ccc-ggtggatgacgcctcaacccttccaaaaccacacatttcagatacaaaagtttctgcaaatcttcctctttcacttccaccttctctccatt 295  Q
    ||| |||||||||||||||| ||||||||||||||| || |||| |||   |||||||||||| | |||||||||||||||| |||||||||||||    
T  2321243 ccctggtggatgacgcctcatcccttccaaaaccacgcacttcaaatatcgaagtttctgcaagttttcctctttcacttcctccttctctccatt 2321148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 2294128 - 2293818
Alignment:
Q  1 tcatcttgatctctttactccctttaatatcaaaattctcatcgttcaaaaacctttctggcttaaattccattggatcctcccaaacacgaggatccca 100  Q
    ||||||| ||||||||||| ||| |||| |||||| ||||||| ||||||||||||||||||||||| ||||  || ||||||||||||||||||||| |    
T  2294128 tcatctttatctctttacttcctgtaatgtcaaaagtctcatccttcaaaaacctttctggcttaaactccaacgggtcctcccaaacacgaggatccaa 2294029  T
Q  101 ccccatctctgccaccataaaattgaccgtcccatttttaggcaccaaataaccattaaaaagcacatcctctgtcaccgcgtgtggtaacacattatgc 200  Q
    | ||||||| |||| ||  ||||| |||||||| |||||||||||||||||||| |  |||| |||||||||| ||||||||||||| |||  |   | |    
T  2294028 cgccatctccgccagcaagaaattcaccgtcccgtttttaggcaccaaataaccgtccaaaaccacatcctctttcaccgcgtgtggcaacggaaatttc 2293929  T
Q  201 cccggtggatgacgcctcaacccttccaaaaccacacatttcagatacaaaagtttctgcaaatcttcctctttcacttccaccttctctccatttccat 300  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||  |||||||||||| |||||||||||||||||| |||||||||||||| |||    
T  2293928 cccggtggatgacgcctcaacccttccaaaaccacacacttcaaataccgaagtttctgcaagtcttcctctttcacttcctccttctctccattttcat 2293829  T
Q  301 catgacccatc 311  Q
    ||  |||||||    
T  2293828 caccacccatc 2293818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 2310459 - 2310149
Alignment:
Q  1 tcatcttgatctctttactccctttaatatcaaaattctcatcgttcaaaaacctttctggcttaaattccattggatcctcccaaacacgaggatccca 100  Q
    ||||||| ||||||||||| |||  |||  ||||| ||||||| ||||||||||||||||||||||| |||| ||| ||||||||||||||| ||||| |    
T  2310459 tcatctttatctctttacttcctggaatgacaaaagtctcatccttcaaaaacctttctggcttaaactccaatgggtcctcccaaacacgacgatccaa 2310360  T
Q  101 ccccatctctgccaccataaaattgaccgtcccatttttaggcaccaaataaccattaaaaagcacatcctctgtcaccgcgtgtggtaacacattatgc 200  Q
    | ||||||| ||||  |  ||||| |||||||| |||||||||||||||||||| |  |||| |||||||||| ||||||||||||| |||  |   | |    
T  2310359 cgccatctccgccagaaagaaattcaccgtcccgtttttaggcaccaaataaccgtccaaaaccacatcctctttcaccgcgtgtggcaacggaaatttc 2310260  T
Q  201 cccggtggatgacgcctcaacccttccaaaaccacacatttcagatacaaaagtttctgcaaatcttcctctttcacttccaccttctctccatttccat 300  Q
    |||| ||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||| |||||||||||||||||| |||||||||||||| |||    
T  2310259 cccgatggatgacgcctcaacccttccaaaaccacacacttcaaataccaaagtttctgcaagtcttcctctttcacttcctccttctctccattttcat 2310160  T
Q  301 catgacccatc 311  Q
    ||  |||||||    
T  2310159 caccacccatc 2310149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 41127323 - 41127050
Alignment:
Q  1 tcatcttgatctctttactccctttaatatcaaaattctcatcgttcaaaaacctttctggcttaaattccattggatcctcccaaacacgaggatccca 100  Q
    ||||||| ||||||||| ||||  |||||||||||  |||||| ||||||||||||||||| ||||| |||| |||||| |||||||||| ||| ||||     
T  41127323 tcatctttatctctttagtcccggtaatatcaaaagcctcatccttcaaaaacctttctggtttaaactccaatggatcttcccaaacactagggtccct 41127224  T
Q  101 ccccatctctgccaccataaaattgaccgtcccatttttaggcaccaaataaccattaaaaagcacatcctctgtcaccgcgtgtggtaacacattatgc 200  Q
    ||| || ||||||||||| ||||| ||   | |||||||||||| ||| ||||| |  |||| |||||||||  ||||||| || || ||||||   |||    
T  41127223 ccctatgtctgccaccatgaaattcactaccacatttttaggcagcaagtaaccgtcgaaaaccacatcctccttcaccgcatggggcaacacaaagtgc 41127124  T
Q  201 cccggtggatgacgcctcaacccttccaaaaccacacatttcagatacaaaagtttctgcaaatcttcctcttt 274  Q
    |||||||| |||| ||||| ||||||||||| |||||| || |||||    || |||||||| |||||||||||    
T  41127123 cccggtgggtgacacctcagcccttccaaaatcacacactttagatatggtaggttctgcaagtcttcctcttt 41127050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 50 - 187
Target Start/End: Complemental strand, 26506883 - 26506746
Alignment:
Q  50 aaacctttctggcttaaattccattggatcctcccaaacacgaggatcccaccccatctctgccaccataaaattgaccgtcccatttttaggcaccaaa 149  Q
    |||||| |||||||| ||| |||| ||||||||||||||||  ||||||||||| | |||||||||||||||||| || ||||||||||||||||||||     
T  26506883 aaacctatctggcttgaatgccatgggatcctcccaaacacttggatcccacccaacctctgccaccataaaattaactgtcccatttttaggcaccaag 26506784  T
Q  150 taaccattaaaaagcacatcctctgtcaccgcgtgtgg 187  Q
    ||||| ||||||| ||||||||| ||||| || |||||    
T  26506783 taaccgttaaaaatcacatcctcggtcactgcatgtgg 26506746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 50 - 162
Target Start/End: Complemental strand, 26494838 - 26494726
Alignment:
Q  50 aaacctttctggcttaaattccattggatcctcccaaacacgaggatcccaccccatctctgccaccataaaattgaccgtcccatttttaggcaccaaa 149  Q
    |||||| |||||||||||  || | ||||||||||||||    |||||  | || || ||||||||||||||||| || ||||||||||||||||||||     
T  26494838 aaacctctctggcttaaacaccgtaggatcctcccaaaccgttggatctaatcctatatctgccaccataaaattcacagtcccatttttaggcaccaag 26494739  T
Q  150 taaccattaaaaa 162  Q
    |||||||| ||||    
T  26494738 taaccattcaaaa 26494726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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