View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15589_low_34 (Length: 298)
Name: NF15589_low_34
Description: NF15589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15589_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-144; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 30431185 - 30430912
Alignment:
| Q |
18 |
tatacaaatacaaatgtaaggatggatcaatctattaaatatatgtcaatcatctaagatgattaatcttttgtaaatgtcaacttaagctcaaagttga |
117 |
Q |
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| T |
30431185 |
tatacaaatacaaatgtaaggatggatcaatctattaaatatatgtcaatcatctaagatgattaatcttttgtaaatgtcaacttaagctcaaagttga |
30431086 |
T |
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| Q |
118 |
taaaactattatttttaccaatttgttttctctgaatgtgatttctcacttatttaatgattaatatttttgtatccatgatgctgaagaaaaagaaatc |
217 |
Q |
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|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30431085 |
taaaactattatttttaccaatttattttctccgaatgtgatttctcacttatttaatgattaatatttttgtatccatgatgctgaagaaaaagaaatc |
30430986 |
T |
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| Q |
218 |
actagtaagaaaagaagcaagaatgactcattgcctgctgatcatcatgcacaaaatcaatcggattcttctct |
291 |
Q |
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| T |
30430985 |
actagtaagaaaagaagcaagaatgactcattgcctgctgatcatcacgcacaaaatcaatcgaattcttctct |
30430912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 30419319 - 30419084
Alignment:
| Q |
18 |
tatacaaatacaaatgtaaggatggatcaatctattaaatatatgtcaatcatctaagatgattaatcttttgtaaatgtcaacttaagctcaaagttga |
117 |
Q |
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|||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||| | | ||||||| |
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| T |
30419319 |
tatacaaacacaaatgtagggatggatcaatctattaaatatatgtcaatcatcttggatgattaatcttt-gtaaatgccaacttaatccccaagttga |
30419221 |
T |
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| Q |
118 |
taaaactattatttttaccaatttgttttctctgaatgtgattt-ctcacttatttaatgattaatatttttgtatccatgatgctgaagaaaaagaaat |
216 |
Q |
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| T |
30419220 |
taaaactattatttttatcaatttgttttctccgaatgtgattttctcacttatttaatgatcaatatttttgtatccatgatgtagaaaaagaagaagt |
30419121 |
T |
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| Q |
217 |
cactagtaagaaaagaagcaagaatgactcattgcct |
253 |
Q |
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| T |
30419120 |
cactagtaaggaatgaagcaagaatgactcattgcct |
30419084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 43 - 252
Target Start/End: Complemental strand, 30416005 - 30415796
Alignment:
| Q |
43 |
atcaatctattaaatatatgtcaatcatctaagatgattaatcttttgtaaatgtcaacttaagctcaaagttgataaaactattatttttaccaatttg |
142 |
Q |
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|||||||||||||||| |||| ||||||||| |||||||||||||| ||||||| |||||||| | | |||||||||||||||||||||||||||||||| |
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| T |
30416005 |
atcaatctattaaatacatgttaatcatctaggatgattaatcttt-gtaaatgccaacttaatccccaagttgataaaactattatttttaccaatttg |
30415907 |
T |
|
| Q |
143 |
ttttctctgaatgtgattt-ctcacttatttaatgattaatatttttgtatccatgatgctgaagaaaaagaaatcactagtaagaaaagaagcaagaat |
241 |
Q |
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||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||| || ||||| ||||||||||| |||||||||||||| |
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| T |
30415906 |
ttttctctgaatgcgattttctcacttatttaatgattaatatttttgtatccatgatgcagaaaaagaagaagtcactagtaaggaaagaagcaagaat |
30415807 |
T |
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| Q |
242 |
gactcattgcc |
252 |
Q |
| |
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||||||||||| |
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| T |
30415806 |
gactcattgcc |
30415796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 113 - 208
Target Start/End: Complemental strand, 30448219 - 30448121
Alignment:
| Q |
113 |
gttgataaaactattatttttaccaatttgttttctctgaatgtgatttctcact---tatttaatgattaatatttttgtatccatgatgctgaagaa |
208 |
Q |
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||||||||||||||||| ||||||||||||||||||| |||| | |||||||||| |||||||||||||||||||||||||||||| ||| |||||| |
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| T |
30448219 |
gttgataaaactattatatttaccaatttgttttctccgaatattatttctcacttattatttaatgattaatatttttgtatccatgttgcagaagaa |
30448121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 117 - 208
Target Start/End: Complemental strand, 30431619 - 30431528
Alignment:
| Q |
117 |
ataaaactattatttttaccaatttgttttctctgaatgtgatttct-cacttatttaatgattaatatttttgtatccatgatgctgaagaa |
208 |
Q |
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|||||||||||||| | ||||||||||||| ||||| || |||| | |||||||||||||||||||||||| |||||||| ||| |||||| |
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| T |
30431619 |
ataaaactattattat-accaatttgtttttcctgaacgtcattttttcacttatttaatgattaatattttcatatccatgttgcagaagaa |
30431528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 30429474 - 30429345
Alignment:
| Q |
16 |
catatacaaatacaaatgtaaggatggatcaatctattaaatatatgtcaatcatctaagatgattaatcttttgtaaatgtcaacttaagctcaaagtt |
115 |
Q |
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|||||| |||| ||||||| |||||||||||| | |||| || || |||||||||| |||| |||| || |||||||| ||| | ||||| || || | |
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| T |
30429474 |
catataaaaattcaaatgttgggatggatcaatatcttaattagatctcaatcatcttagattattagtc-tttgtaaaggtccatttaagatccaaact |
30429376 |
T |
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| Q |
116 |
gataaaactattatttttaccaatttgtttt |
146 |
Q |
| |
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||||||| |||||||||||||| ||| |||| |
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| T |
30429375 |
gataaaattattatttttaccattttttttt |
30429345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 240
Target Start/End: Complemental strand, 30447322 - 30447120
Alignment:
| Q |
37 |
ggatggatcaatctattaaatatatgtcaatcatctaagatgattaatcttttgtaaatgtcaacttaagctcaaagttgataaaactattatttttacc |
136 |
Q |
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||||| |||||||| ||||||| | |||||||||| ||||||||| ||| | ||| ||| |||||| | ||| | |||||||||||||||||||| |
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| T |
30447322 |
ggatgcatcaatctcttaaataggtctcaatcatctcagatgattagtctatgtaaaaggtcgacttaaaacccaagctaataaaactattatttttacc |
30447223 |
T |
|
| Q |
137 |
aatttgttttc--tctgaatgtgatttctcacttatttaatgattaatatttttgtatccatgatgctgaagaaaaagaaatcactagtaagaaaagaag |
234 |
Q |
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|||| ||||| || ||||| ||||| | |||||||||||||| |||| || ||| | ||| || |||| ||||| ||||||||||||||| ||| |
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| T |
30447222 |
aattatttttctgtcataatgtcatttcacgcttatttaatgattgatatcattatatgc---atgttgtagaagaagaattcactagtaagaaaaaaag |
30447126 |
T |
|
| Q |
235 |
caagaa |
240 |
Q |
| |
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||||| |
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| T |
30447125 |
aaagaa |
30447120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 230
Target Start/End: Complemental strand, 30415141 - 30415030
Alignment:
| Q |
117 |
ataaaactattatttttaccaa----tttgttttctctgaatgtga-tttctcacttatttaatgattaatatttttgtatccatgatgctgaagaaaaa |
211 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||| | ||||||||||||||||||| |||||||| |||| |||||||||| || |
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| T |
30415141 |
ataaaactattatttttaccaattggtttgttttcttcgaatgtcattttctcacttatttaatga-------ttttgtattcatgttgctgaagaagaa |
30415049 |
T |
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| Q |
212 |
gaaatcactagtaagaaaa |
230 |
Q |
| |
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||| ||| || |||||||| |
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| T |
30415048 |
gaagtcattattaagaaaa |
30415030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 115 - 208
Target Start/End: Complemental strand, 30430085 - 30429991
Alignment:
| Q |
115 |
tgataaaactatta-tttttaccaatttgttttctctgaatgtgattt-ctcacttatttaatgattaatatttttgtatccatgatgctgaagaa |
208 |
Q |
| |
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||||||||||||| |||||||||||| ||||| | |||||| |||| |||||||||||||||||||||||| || ||| |||| ||| |||||| |
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| T |
30430085 |
tgataaaactatttctttttaccaatt-gtttttttagaatgtcattttctcacttatttaatgattaatattgttttatgcatgttgcagaagaa |
30429991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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