View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15589_low_36 (Length: 279)
Name: NF15589_low_36
Description: NF15589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15589_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 45082505 - 45082763
Alignment:
| Q |
1 |
ctttgacaaaaatgtccttcacaaaagcacctctaccgacggcagatttgatcctaacagctgattctgtgttgattgccatgacatcttcgattcttac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||| |||||||| |
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| T |
45082505 |
ctttgacaaaaatgtccttcacaaaagcacctctaccgacggcagatttgatcctaacagctgattctgtattgattgccgtgacgtcttcaattcttac |
45082604 |
T |
|
| Q |
101 |
atcttggattccacctgacatttcactgcctaatgcaaccatcgcacttttaggggatatacatgttagccttcttacgattatcttttgtgatggcttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
45082605 |
atcttggattccacctgacatttcactgcctaatgcaaccaaagcacttttaggggatatacatgttagccttcttacgattatattttgtgatggcttg |
45082704 |
T |
|
| Q |
201 |
ccaactttgattccatactcatcccatccacttttaattgcaatacaatcatcaccaga |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45082705 |
ccaactttgattccatactcatcccatccacttttaattgcaatacaatcatcaccaga |
45082763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 45067419 - 45067680
Alignment:
| Q |
1 |
ctttgacaaaaatgtccttcacaaaagcacctctaccgacggcagatttgatcctaacagctgattctgtgttgattgccatgacatcttcgattcttac |
100 |
Q |
| |
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||||||| || || ||||||||| | || |||||||| ||||| | |||||| |||||||||||||||||||||||||| ||| ||||| ||||| | |
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| T |
45067419 |
ctttgacgaatatatccttcacatatgcgcctctaccaacggctgttttgattctaacagctgattctgtgttgattgctgtgatgtcttcaattctaat |
45067518 |
T |
|
| Q |
101 |
atcttggattccacctgacatttcactgcctaatgcaaccatcgcacttttaggggatatacatgttagccttcttacgattatcttttgtgatggcttg |
200 |
Q |
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| T |
45067519 |
atcttggattccacctgacatttcactgcctaatgcaaccatcgcacttttaggggatatacatgttagccttcttacgattatcttttgtgatggcttt |
45067618 |
T |
|
| Q |
201 |
ccaactttgattccatactcatcccatccacttttaattgcaatacaatcatcaccagagac |
262 |
Q |
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|||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
45067619 |
ccaactttgattccatacccatccaatccacttttaatcgcaatacaatcatcaccagagac |
45067680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 45074979 - 45075237
Alignment:
| Q |
1 |
ctttgacaaaaatgtccttcacaaaagcacctctaccgacggcagatttgatcctaacagctgattctgtgttgattgccatgacatcttcgattcttac |
100 |
Q |
| |
|
||||||||||||||||||||||| | || |||||||||| ||| | |||||| |||||||| |||||||| ||||||||| |||| ||||| | ||| || |
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| T |
45074979 |
ctttgacaaaaatgtccttcacatatgcgcctctaccgatggctgttttgattctaacagccgattctgtcttgattgccgtgacgtcttcaactctaac |
45075078 |
T |
|
| Q |
101 |
atcttggattccacctgacatttcactgcctaatgcaaccatcgcacttttaggggatatacatgttagccttcttacgattatcttttgtgatggcttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| | ||| |||||||| |
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| T |
45075079 |
atcttggattccacctgacatttcactgcctaatgcaaccattgcacttttaggggatatacatgttagccttcttatgattatttgttgagatggcttt |
45075178 |
T |
|
| Q |
201 |
ccaactttgattccatactcatcccatccacttttaattgcaatacaatcatcaccaga |
259 |
Q |
| |
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|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
45075179 |
ccaaatttgattccatactcatcccatccactttttattgcaatacaatcatcaccaga |
45075237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 45078209 - 45078470
Alignment:
| Q |
1 |
ctttgacaaaaatgtccttcacaaaagcacctctaccgacggcagatttgatcctaacagctgattctgtgttgattgccatgacatcttcgattcttac |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| |||||||| || |||| ||| ||||||||||||||||| |||||||||| ||||| || |
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| T |
45078209 |
ctttgacgaaaatgtccttcacaaaagcacctctaccgacagcagattttattctaatagcggattctgtgttgattgctgtgacatcttcaattctaac |
45078308 |
T |
|
| Q |
101 |
atcttggattccacctgacatttcactgcctaatgcaaccatcgcacttttaggggatatacatgttagccttcttacgattatcttttgtgatggcttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||| |||| |||||||| |||||| | |||||||||| | |
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| T |
45078309 |
atcttggattccacctgacatttcactgcctaatgcaaccatagcactatcaggggatatacaagttaaccttcttatgattatttgttgtgatggcatt |
45078408 |
T |
|
| Q |
201 |
ccaactttgattccatactcatcccatccacttttaattgcaatacaatcatcaccagagac |
262 |
Q |
| |
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|||||||| |||||||||||||||||||||||||| |||||||| |||||||| |||||||| |
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| T |
45078409 |
ccaactttaattccatactcatcccatccactttttattgcaatgcaatcatcgccagagac |
45078470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 34504754 - 34505015
Alignment:
| Q |
1 |
ctttgacaaaaatgtccttcacaaaagcacctctaccgacggcagatttgatcctaacagctgattctgtgttgattgccatgacatcttcgattcttac |
100 |
Q |
| |
|
||||||||||||||||||||||| | | |||||||||||||| |||||||| ||||||||||||||||| ||||| || | || ||||| | |||||| |
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| T |
34504754 |
ctttgacaaaaatgtccttcacatatccgcctctaccgacggctgatttgattctaacagctgattctgtattgatagcagttacgtcttcaactcttac |
34504853 |
T |
|
| Q |
101 |
atcttggattccacctgacatttcactgcctaatgcaaccatcgcacttttaggggatatacatgttagccttcttacgattatcttttgtgatggcttg |
200 |
Q |
| |
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|| || ||||||||| ||||||||||| ||||| |||| ||| ||||| | ||||||||||||||||||||||||| |||||| | || ||||||||| |
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| T |
34504854 |
attttcgattccacccgacatttcactccctaaagcaatcatagcactatctggggatatacatgttagccttcttatgattatttgttttgatggcttt |
34504953 |
T |
|
| Q |
201 |
ccaactttgattccatactcatcccatccacttttaattgcaatacaatcatcaccagagac |
262 |
Q |
| |
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|| | ||| |||||||| | ||||||||||||||| || ||||||||||||||||||||||| |
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| T |
34504954 |
ccgaatttaattccatattgatcccatccactttttatcgcaatacaatcatcaccagagac |
34505015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 30 - 259
Target Start/End: Original strand, 17584486 - 17584715
Alignment:
| Q |
30 |
cctctaccgacggcagatttgatcctaacagctgattctgtgttgattgccatgacatcttcgattcttacatcttggattccacctgacatttcactgc |
129 |
Q |
| |
|
|||||||| || |||| |||||| |||| |||||||| ||| || ||||| ||| |||||| ||||| | ||||||||||||||| ||||||||||||| |
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| T |
17584486 |
cctctaccaactgcagttttgattctaatagctgattatgtattcattgctgtgagatcttcaattctaatatcttggattccaccagacatttcactgc |
17584585 |
T |
|
| Q |
130 |
ctaatgcaaccatcgcacttttaggggatatacatgttagccttcttacgattatcttttgtgatggcttgccaactttgattccatactcatcccatcc |
229 |
Q |
| |
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||||||||| ||| ||||| | ||| |||| |||| | |||||| | | ||||| | ||| |||| | |||| || ||||||||| |||| ||| || |
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| T |
17584586 |
ctaatgcaatcatagcactatcaggtgatacacatttaagccttgtaattattatgtgttggcttggcattccaaattggattccatattcattccaacc |
17584685 |
T |
|
| Q |
230 |
acttttaattgcaatacaatcatcaccaga |
259 |
Q |
| |
|
|||||| || |||| ||||||||||||||| |
|
|
| T |
17584686 |
actttttatagcaacacaatcatcaccaga |
17584715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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