View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15589_low_39 (Length: 270)

Name: NF15589_low_39
Description: NF15589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15589_low_39
NF15589_low_39
[»] chr7 (36 HSPs)
chr7 (10-114)||(42663271-42663375)
chr7 (158-252)||(42663420-42663514)
chr7 (42-114)||(45256619-45256691)
chr7 (43-113)||(16829573-16829643)
chr7 (42-114)||(22588849-22588921)
chr7 (43-113)||(16954008-16954078)
chr7 (40-114)||(48395353-48395427)
chr7 (155-226)||(48395246-48395317)
chr7 (158-226)||(8352772-8352840)
chr7 (158-224)||(6892638-6892704)
chr7 (158-224)||(48314366-48314432)
chr7 (158-223)||(17909055-17909120)
chr7 (158-219)||(22588966-22589027)
chr7 (43-109)||(7212552-7212618)
chr7 (163-224)||(6427210-6427271)
chr7 (187-228)||(41985123-41985164)
chr7 (185-225)||(6427354-6427394)
chr7 (42-114)||(17908952-17909024)
chr7 (185-225)||(27164869-27164909)
chr7 (158-194)||(34820640-34820676)
chr7 (168-227)||(2849536-2849595)
chr7 (185-224)||(29162311-29162350)
chr7 (158-225)||(40231711-40231777)
chr7 (178-233)||(42552890-42552945)
chr7 (173-227)||(5068643-5068697)
chr7 (158-228)||(12007191-12007261)
chr7 (158-220)||(47925341-47925403)
chr7 (185-226)||(30864449-30864490)
chr7 (197-226)||(35005141-35005170)
chr7 (185-226)||(38344758-38344799)
chr7 (158-226)||(27704433-27704500)
chr7 (186-226)||(31274562-31274602)
chr7 (186-226)||(37392041-37392081)
chr7 (186-226)||(44187689-44187729)
chr7 (158-226)||(47448824-47448892)
chr7 (158-226)||(48639389-48639456)
[»] chr3 (33 HSPs)
chr3 (42-113)||(9326873-9326944)
chr3 (158-224)||(9326990-9327056)
chr3 (158-225)||(41448181-41448248)
chr3 (40-114)||(11225016-11225090)
chr3 (158-227)||(47187525-47187594)
chr3 (158-227)||(19623257-19623326)
chr3 (158-226)||(31143268-31143336)
chr3 (158-226)||(39901589-39901657)
chr3 (163-222)||(41850945-41851004)
chr3 (158-227)||(48405407-48405476)
chr3 (185-226)||(52454126-52454167)
chr3 (185-225)||(34021495-34021535)
chr3 (42-114)||(37073769-37073841)
chr3 (165-224)||(5393846-5393905)
chr3 (158-225)||(19150324-19150391)
chr3 (164-227)||(23377979-23378042)
chr3 (173-224)||(39284687-39284738)
chr3 (158-212)||(6976942-6976996)
chr3 (179-225)||(21306024-21306070)
chr3 (168-226)||(38017942-38018000)
chr3 (185-226)||(7246-7287)
chr3 (188-225)||(3958053-3958090)
chr3 (186-227)||(35074123-35074164)
chr3 (185-226)||(36818954-36818995)
chr3 (186-227)||(46473125-46473166)
chr3 (186-227)||(53102935-53102976)
chr3 (185-226)||(53473608-53473649)
chr3 (187-227)||(3069608-3069648)
chr3 (186-226)||(27198193-27198233)
chr3 (185-225)||(32931950-32931990)
chr3 (186-226)||(38359339-38359379)
chr3 (186-226)||(49361857-49361897)
chr3 (158-226)||(50559217-50559285)
[»] chr1 (31 HSPs)
chr1 (43-110)||(17777346-17777413)
chr1 (42-114)||(3904293-3904365)
chr1 (158-227)||(35883612-35883681)
chr1 (49-114)||(1523187-1523252)
chr1 (49-114)||(2279218-2279283)
chr1 (155-223)||(1922427-1922495)
chr1 (158-224)||(3672341-3672406)
chr1 (173-227)||(33694221-33694275)
chr1 (161-223)||(40809498-40809559)
chr1 (158-226)||(4466693-4466760)
chr1 (178-226)||(38520018-38520066)
chr1 (185-224)||(29362724-29362763)
chr1 (176-226)||(12021958-12022008)
chr1 (178-228)||(17526415-17526465)
chr1 (186-224)||(40238438-40238476)
chr1 (186-224)||(50528090-50528128)
chr1 (158-223)||(1523299-1523364)
chr1 (186-223)||(3558847-3558884)
chr1 (158-223)||(5574265-5574329)
chr1 (185-226)||(9987949-9987990)
chr1 (158-227)||(11947792-11947861)
chr1 (158-227)||(35369697-35369765)
chr1 (198-227)||(36669415-36669444)
chr1 (185-233)||(6829815-6829863)
chr1 (185-221)||(25130706-25130742)
chr1 (158-226)||(30535989-30536057)
chr1 (182-226)||(42577470-42577514)
chr1 (186-226)||(44672063-44672103)
chr1 (158-226)||(48858821-48858889)
chr1 (158-226)||(48872377-48872444)
chr1 (158-226)||(48983673-48983741)
[»] chr5 (27 HSPs)
chr5 (41-114)||(844144-844217)
chr5 (43-114)||(43057546-43057617)
chr5 (46-114)||(6968604-6968672)
chr5 (43-114)||(34270226-34270297)
chr5 (158-227)||(11148508-11148577)
chr5 (168-224)||(8728596-8728652)
chr5 (158-224)||(26754643-26754709)
chr5 (158-224)||(41621933-41621999)
chr5 (155-225)||(43057434-43057504)
chr5 (158-227)||(30838370-30838439)
chr5 (168-224)||(2629818-2629874)
chr5 (158-224)||(4719650-4719716)
chr5 (158-224)||(35570813-35570879)
chr5 (163-224)||(3109597-3109658)
chr5 (179-225)||(844035-844081)
chr5 (186-224)||(17063865-17063903)
chr5 (185-227)||(32634705-32634747)
chr5 (179-225)||(34270544-34270590)
chr5 (163-224)||(15004734-15004795)
chr5 (183-224)||(27440479-27440520)
chr5 (185-226)||(27487885-27487926)
chr5 (163-212)||(34674868-34674917)
chr5 (158-226)||(611862-611930)
chr5 (198-226)||(6964415-6964443)
chr5 (185-225)||(9594477-9594517)
chr5 (198-226)||(12401190-12401218)
chr5 (163-227)||(14126413-14126476)
[»] chr2 (40 HSPs)
chr2 (44-114)||(29471921-29471991)
chr2 (42-114)||(40874149-40874221)
chr2 (43-113)||(24727310-24727380)
chr2 (156-225)||(43820744-43820813)
chr2 (165-226)||(22966784-22966845)
chr2 (155-224)||(24727592-24727661)
chr2 (49-113)||(15123827-15123891)
chr2 (168-224)||(25507255-25507311)
chr2 (158-226)||(29472036-29472103)
chr2 (158-225)||(13453960-13454027)
chr2 (158-225)||(40106608-40106675)
chr2 (44-114)||(10099341-10099411)
chr2 (155-224)||(40874263-40874332)
chr2 (173-225)||(31227570-31227622)
chr2 (44-114)||(10041320-10041390)
chr2 (158-224)||(15123941-15124007)
chr2 (155-221)||(40602392-40602458)
chr2 (49-114)||(9432110-9432175)
chr2 (185-226)||(27307263-27307304)
chr2 (186-226)||(1352386-1352426)
chr2 (165-225)||(37767778-37767838)
chr2 (168-224)||(45376236-45376292)
chr2 (185-224)||(3196119-3196158)
chr2 (158-225)||(7258567-7258634)
chr2 (187-226)||(19695714-19695753)
chr2 (164-227)||(34141439-34141501)
chr2 (158-228)||(9979092-9979162)
chr2 (185-227)||(29168722-29168764)
chr2 (182-224)||(30416360-30416402)
chr2 (158-224)||(31629604-31629670)
chr2 (185-227)||(42821370-42821412)
chr2 (44-97)||(14151652-14151705)
chr2 (158-211)||(15610837-15610890)
chr2 (155-227)||(5031920-5031992)
chr2 (164-224)||(15260307-15260367)
chr2 (183-227)||(29871382-29871426)
chr2 (177-225)||(31415239-31415287)
chr2 (187-223)||(39285854-39285890)
chr2 (198-226)||(41353542-41353570)
chr2 (158-226)||(44050013-44050081)
[»] chr8 (26 HSPs)
chr8 (158-227)||(26629115-26629184)
chr8 (49-114)||(37379333-37379398)
chr8 (158-226)||(30170734-30170802)
chr8 (49-114)||(30170627-30170692)
chr8 (173-224)||(8835890-8835941)
chr8 (158-220)||(37379439-37379501)
chr8 (165-227)||(43066606-43066668)
chr8 (158-227)||(13592763-13592832)
chr8 (161-224)||(42652501-42652564)
chr8 (158-224)||(4721729-4721795)
chr8 (157-227)||(7376503-7376572)
chr8 (186-228)||(39719281-39719323)
chr8 (185-227)||(41273512-41273554)
chr8 (165-226)||(2730973-2731034)
chr8 (186-227)||(5740807-5740848)
chr8 (173-226)||(5771992-5772045)
chr8 (187-224)||(13884194-13884231)
chr8 (185-226)||(20288531-20288572)
chr8 (185-226)||(20996179-20996220)
chr8 (185-226)||(21075160-21075201)
chr8 (158-218)||(14127250-14127310)
chr8 (198-226)||(33817154-33817182)
chr8 (163-227)||(35701838-35701901)
chr8 (185-225)||(36064029-36064069)
chr8 (187-227)||(37392151-37392191)
chr8 (197-225)||(44010804-44010832)
[»] chr4 (46 HSPs)
chr4 (42-114)||(54221945-54222017)
chr4 (51-113)||(35206280-35206342)
chr4 (46-98)||(45652765-45652817)
chr4 (63-114)||(10762411-10762462)
chr4 (158-226)||(961274-961342)
chr4 (163-223)||(17367446-17367506)
chr4 (158-226)||(31221411-31221478)
chr4 (158-226)||(35206166-35206234)
chr4 (158-224)||(9032780-9032845)
chr4 (158-224)||(40693628-40693694)
chr4 (158-204)||(45652661-45652707)
chr4 (158-224)||(52372197-52372263)
chr4 (158-224)||(56215605-56215671)
chr4 (49-114)||(961387-961452)
chr4 (185-226)||(3222987-3223028)
chr4 (185-234)||(5208359-5208408)
chr4 (185-226)||(7632494-7632535)
chr4 (185-226)||(44368234-44368275)
chr4 (185-225)||(15638160-15638200)
chr4 (158-226)||(50291280-50291347)
chr4 (178-226)||(50831781-50831829)
chr4 (51-114)||(5903178-5903241)
chr4 (186-225)||(21685937-21685976)
chr4 (42-97)||(45511446-45511501)
chr4 (185-227)||(8026785-8026827)
chr4 (158-224)||(24045244-24045310)
chr4 (185-227)||(24235317-24235359)
chr4 (187-225)||(42915253-42915291)
chr4 (40-114)||(52832851-52832925)
chr4 (155-224)||(3078910-3078979)
chr4 (186-227)||(9162063-9162104)
chr4 (187-224)||(12387688-12387725)
chr4 (197-226)||(37727088-37727117)
chr4 (158-223)||(40760074-40760139)
chr4 (158-227)||(50890079-50890147)
chr4 (158-227)||(51255743-51255812)
chr4 (198-227)||(53384372-53384401)
chr4 (185-225)||(1796365-1796405)
chr4 (164-224)||(8810571-8810631)
chr4 (185-225)||(31092394-31092434)
chr4 (164-224)||(32012896-32012956)
chr4 (158-226)||(44272816-44272883)
chr4 (185-225)||(50721777-50721817)
chr4 (186-226)||(51296222-51296262)
chr4 (185-225)||(51377325-51377365)
chr4 (185-225)||(55268033-55268073)
[»] scaffold1625 (1 HSPs)
scaffold1625 (158-227)||(786-855)
[»] chr6 (17 HSPs)
chr6 (158-222)||(38598-38662)
chr6 (163-220)||(10840722-10840779)
chr6 (168-221)||(13093629-13093682)
chr6 (178-227)||(31883329-31883378)
chr6 (158-226)||(17551384-17551452)
chr6 (158-226)||(20029259-20029327)
chr6 (187-226)||(1196056-1196095)
chr6 (187-226)||(3180026-3180065)
chr6 (64-111)||(13093742-13093789)
chr6 (158-225)||(34792021-34792087)
chr6 (185-226)||(8505806-8505847)
chr6 (165-226)||(31204822-31204883)
chr6 (186-227)||(31517202-31517243)
chr6 (158-226)||(2242027-2242095)
chr6 (186-226)||(15722536-15722576)
chr6 (179-227)||(26554492-26554539)
chr6 (158-226)||(33683498-33683566)
[»] scaffold0635 (1 HSPs)
scaffold0635 (44-114)||(5680-5750)
[»] scaffold0086 (1 HSPs)
scaffold0086 (173-223)||(15851-15901)
[»] scaffold0054 (1 HSPs)
scaffold0054 (187-227)||(31623-31663)


Alignment Details
Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 10 - 114
Target Start/End: Original strand, 42663271 - 42663375
Alignment:
Q  10 ataattcttctacttttcacactattaactaaagaggattgatatttgtacatctaatattagacaactttggtgacagccacttttctcctcttgtgat 109  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  42663271 ataattcttctacttttcacactattaactaaagaagattgatatttgtacatctaatattagacaactttggtgacaaccacttttctcctcttgtgat 42663370  T
Q  110 tggac 114  Q
    |||||    
T  42663371 tggac 42663375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 158 - 252
Target Start/End: Original strand, 42663420 - 42663514
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctcttagctaaaaggtttgctgcctaattag 252  Q
    |||| ||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| |||||||||    
T  42663420 atgtgagtatgagatataggattgtttcaaaagttgtcgaaaattgattgtaaaaatatcatttttcatagctaaaaggtttgctacctaattag 42663514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 42 - 114
Target Start/End: Original strand, 45256619 - 45256691
Alignment:
Q  42 agaggattgatatttgtacatctaatattagacaactttggtgacagccacttttctcctcttgtgattggac 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  45256619 agaggattgatatttgtacatctaatattagacaactttggtgacaaccacttttctccttttgtgattggac 45256691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 43 - 113
Target Start/End: Original strand, 16829573 - 16829643
Alignment:
Q  43 gaggattgatatttgtacatctaatattagacaactttggtgacagccacttttctcctcttgtgattgga 113  Q
    ||||| ||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  16829573 gaggagtgatatttgtacaactaatattaaacaactttggtgacaaccacttttctcctcttgtgattgga 16829643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 114
Target Start/End: Original strand, 22588849 - 22588921
Alignment:
Q  42 agaggattgatatttgtacatctaatattagacaactttggtgacagccacttttctcctcttgtgattggac 114  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||| || ||||||||||||    
T  22588849 agaggagtgatatttgtacaactaatattagacaactttggtgacaaccacttttcttcttttgtgattggac 22588921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 43 - 113
Target Start/End: Complemental strand, 16954078 - 16954008
Alignment:
Q  43 gaggattgatatttgtacatctaatattagacaactttggtgacagccacttttctcctcttgtgattgga 113  Q
    ||||| ||||||||||||| ||||||||| ||||||||||||||| ||||||||||||| |||||||||||    
T  16954078 gaggagtgatatttgtacaactaatattaaacaactttggtgacaaccacttttctccttttgtgattgga 16954008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 40 - 114
Target Start/End: Complemental strand, 48395427 - 48395353
Alignment:
Q  40 aaagaggattgatatttgtacatctaatattagacaactttggtgacagccacttttctcctcttgtgattggac 114  Q
    |||||||||||||||||||||| ||||||||||||||  ||||||||| |||||||||| || ||| ||||||||    
T  48395427 aaagaggattgatatttgtacaactaatattagacaatcttggtgacaaccacttttcttcttttgagattggac 48395353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 155 - 226
Target Start/End: Complemental strand, 48395317 - 48395246
Alignment:
Q  155 catatgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    ||||||| ||||| ||| |||| |||||||||||||||||| |||| || ||||||||||||||||||||||    
T  48395317 catatgtgagtataagagagagagttgtttcaaaagttgtcaaaaagtggttgtacaaatatcatttctctt 48395246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 226
Target Start/End: Complemental strand, 8352840 - 8352772
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    |||||||||||||| ||| ||||||||||||| ||||| |||| || ||||| ||||||||||||||||    
T  8352840 atgtaagtatgagagagatggttgtttcaaaaattgtcaaaaagtggttgtataaatatcatttctctt 8352772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 6892638 - 6892704
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctc 224  Q
    |||| ||||||||| |||||||||||||| |||||||| || | || ||||||||||||||||||||    
T  6892638 atgtgagtatgagagagagggttgtttcataagttgtcaaagagtggttgtacaaatatcatttctc 6892704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 48314366 - 48314432
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctc 224  Q
    |||||||||||||| |||||||||||  |||||||||  |||| || ||||||||||||||||||||    
T  48314366 atgtaagtatgagagagagggttgttgtaaaagttgttaaaaagtggttgtacaaatatcatttctc 48314432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 17909055 - 17909120
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttct 223  Q
    |||| |||| |||| |||||||| |||||||||||||| |||| ||||||||||||||| ||||||    
T  17909055 atgtgagtacgagagagagggttatttcaaaagttgtcaaaaaatgattgtacaaatattatttct 17909120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 22588966 - 22589027
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcat 219  Q
    |||| ||||||||| || |||||||||||||||||||| |||| || |||||||||||||||    
T  22588966 atgtgagtatgagagagggggttgtttcaaaagttgtcaaaaaatggttgtacaaatatcat 22589027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 109
Target Start/End: Original strand, 7212552 - 7212618
Alignment:
Q  43 gaggattgatatttgtacatctaatattagacaactttggtgacagccacttttctcctcttgtgat 109  Q
    ||||||||||||||||||| ||| | |||||||| ||||||||||  ||||||| | ||||||||||    
T  7212552 gaggattgatatttgtacaactagttttagacaattttggtgacaatcacttttattctcttgtgat 7212618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 6427271 - 6427210
Alignment:
Q  163 agtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctc 224  Q
    ||||||||| |||||||||||  |||||||||| |||| || ||||| ||||||||||||||    
T  6427271 agtatgagagagagggttgttctaaaagttgtcaaaaagtggttgtataaatatcatttctc 6427210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 228
Target Start/End: Original strand, 41985123 - 41985164
Alignment:
Q  187 aaagttgtcgaaaattgattgtacaaatatcatttctcttag 228  Q
    |||||||||  |||||||||||||||||||||||||||||||    
T  41985123 aaagttgtcacaaattgattgtacaaatatcatttctcttag 41985164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 6427354 - 6427394
Alignment:
Q  185 caaaagttgtcgaaaattgattgtacaaatatcatttctct 225  Q
    ||||||||||| |||||||||||||||||||||||| ||||    
T  6427354 caaaagttgtctaaaattgattgtacaaatatcattcctct 6427394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 114
Target Start/End: Original strand, 17908952 - 17909024
Alignment:
Q  42 agaggattgatatttgtacatctaatattagacaactttggtgacagccacttttctcctcttgtgattggac 114  Q
    |||||| |||||||| |||| |||||||| ||||| ||| |||| | ||| ||||||||| ||||||||||||    
T  17908952 agaggagtgatatttatacaactaatatttgacaattttagtgagaaccatttttctccttttgtgattggac 17909024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 27164869 - 27164909
Alignment:
Q  185 caaaagttgtcgaaaattgattgtacaaatatcatttctct 225  Q
    |||||||||||  ||||||||||||||||||||||||||||    
T  27164869 caaaagttgtcacaaattgattgtacaaatatcatttctct 27164909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 194
Target Start/End: Complemental strand, 34820676 - 34820640
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgt 194  Q
    |||| ||||||||||||||||||||||||||||||||    
T  34820676 atgtgagtatgagatagagggttgtttcaaaagttgt 34820640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 227
Target Start/End: Original strand, 2849536 - 2849595
Alignment:
Q  168 gagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctta 227  Q
    |||| |||| ||| ||||||||||| || |||| | ||||||||||||||||||||||||    
T  2849536 gagagagagagttatttcaaaagttatcaaaaaataattgtacaaatatcatttctctta 2849595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 224
Target Start/End: Original strand, 29162311 - 29162350
Alignment:
Q  185 caaaagttgtcgaaaattgattgtacaaatatcatttctc 224  Q
    |||||||||||  |||||||||||||||||||||||||||    
T  29162311 caaaagttgtcacaaattgattgtacaaatatcatttctc 29162350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 225
Target Start/End: Original strand, 40231711 - 40231777
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctct 225  Q
    |||| |||||||||| || ||||||  ||||||||||| |||||  ||||||||||||||||||||||    
T  40231711 atgtgagtatgagatggaaggttgtcacaaaagttgtcaaaaata-attgtacaaatatcatttctct 40231777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 42552945 - 42552890
Alignment:
Q  178 gttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctcttagctaaa 233  Q
    |||||| ||||| ||||  |||| ||||||||||||||||||||||||||| ||||    
T  42552945 gttgttacaaaaattgtataaaaatgattgtacaaatatcatttctcttagataaa 42552890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 5068643 - 5068697
Alignment:
Q  173 agagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctta 227  Q
    |||| ||||||||||||||| ||  ||| || |||||||||||||||||||||||    
T  5068643 agagtgttgtttcaaaagttatcataaaatggttgtacaaatatcatttctctta 5068697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 228
Target Start/End: Original strand, 12007191 - 12007261
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctcttag 228  Q
    |||| ||||||||| |||  |||||  ||||||||||| |||| || |||| |||||||||||||||||||    
T  12007191 atgtgagtatgagagagaaagttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctcttag 12007261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 220
Target Start/End: Complemental strand, 47925403 - 47925341
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatt 220  Q
    |||| ||||||||| ||||||||||| ||||||||||  || | || ||||||||||||||||    
T  47925403 atgtgagtatgagagagagggttgttccaaaagttgttaaagagtggttgtacaaatatcatt 47925341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 30864449 - 30864490
Alignment:
Q  185 caaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  30864449 caaaagttgtcacaaattggttgtacaaatatcatttctctt 30864490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 226
Target Start/End: Original strand, 35005141 - 35005170
Alignment:
Q  197 aaaattgattgtacaaatatcatttctctt 226  Q
    ||||||||||||||||||||||||||||||    
T  35005141 aaaattgattgtacaaatatcatttctctt 35005170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 38344799 - 38344758
Alignment:
Q  185 caaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    ||||||||||| |||||||||||| ||||||| |||||||||    
T  38344799 caaaagttgtcaaaaattgattgttcaaatataatttctctt 38344758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 226
Target Start/End: Complemental strand, 27704500 - 27704433
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    |||| ||||||||||||| ||||||  ||||||||||  |||| |  ||||||||||||||||||||||    
T  27704500 atgtgagtatgagatagaaggttgta-caaaagttgtacaaaaatagttgtacaaatatcatttctctt 27704433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 31274562 - 31274602
Alignment:
Q  186 aaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    ||||||||||  |||||| ||||||||||||||||||||||    
T  31274562 aaaagttgtcacaaattggttgtacaaatatcatttctctt 31274602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 37392081 - 37392041
Alignment:
Q  186 aaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    |||||||||| |||| || ||||||||||||||||||||||    
T  37392081 aaaagttgtcaaaaaatggttgtacaaatatcatttctctt 37392041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 44187729 - 44187689
Alignment:
Q  186 aaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    |||||||||| |||| |||||||||| ||||||||||||||    
T  44187729 aaaagttgtcaaaaaatgattgtacacatatcatttctctt 44187689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 226
Target Start/End: Complemental strand, 47448892 - 47448824
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    |||| ||||||||| |||  |||||  ||||||||||| |||| || |||| |||||||||||||||||    
T  47448892 atgtgagtatgagagagaaagttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctctt 47448824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 226
Target Start/End: Original strand, 48639389 - 48639456
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    |||| ||||||||| ||| ||||||  ||||||||||  |||| || ||||||||||||||||||||||    
T  48639389 atgtgagtatgagagagaaggttgta-caaaagttgtacaaaaatggttgtacaaatatcatttctctt 48639456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 42 - 113
Target Start/End: Original strand, 9326873 - 9326944
Alignment:
Q  42 agaggattgatatttgtacatctaatattagacaactttggtgacagccacttttctcctcttgtgattgga 113  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  9326873 agaggattgatatttgtacatataatattagacaactttggtgacaaccacttttctcctcttgtgattgga 9326944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 9326990 - 9327056
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctc 224  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9326990 atgtgagtatgagatagatggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctc 9327056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 158 - 225
Target Start/End: Original strand, 41448181 - 41448248
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctct 225  Q
    |||| ||||||||| ||||||||||||||||||||||  |||| || |||||||||||||||||||||    
T  41448181 atgtgagtatgagagagagggttgtttcaaaagttgtttaaaaatggttgtacaaatatcatttctct 41448248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 114
Target Start/End: Original strand, 11225016 - 11225090
Alignment:
Q  40 aaagaggattgatatttgtacatctaatattagacaactttggtgacagccacttttctcctcttgtgattggac 114  Q
    |||||||| ||||||||||||   ||| ||||||||| |||  ||||||||||||||||||||||||||||||||    
T  11225016 aaagaggagtgatatttgtaccattaacattagacaattttaatgacagccacttttctcctcttgtgattggac 11225090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 158 - 227
Target Start/End: Original strand, 47187525 - 47187594
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctta 227  Q
    |||||||||||||| | ||||||||||||||||||||  |||| | ||||||||||||||||| ||||||    
T  47187525 atgtaagtatgagagaaagggttgtttcaaaagttgtgaaaaagtaattgtacaaatatcattcctctta 47187594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 227
Target Start/End: Original strand, 19623257 - 19623326
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctta 227  Q
    |||||||||||||| |||   |||||| ||||||| || |||| ||||||||||||||||||||||||||    
T  19623257 atgtaagtatgagagagattattgttttaaaagttatcaaaaagtgattgtacaaatatcatttctctta 19623326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 226
Target Start/End: Complemental strand, 31143336 - 31143268
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    |||| ||||| ||| ||| | ||||||||||||||||| |||| ||||||||||||||||| |||||||    
T  31143336 atgtgagtattagagagatgattgtttcaaaagttgtcaaaaaatgattgtacaaatatcacttctctt 31143268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 226
Target Start/End: Complemental strand, 39901657 - 39901589
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    |||| |||||||||||||  |||||| ||||| || || |||| |||||||||||||||||||||||||    
T  39901657 atgttagtatgagatagaaagttgttccaaaaattatcaaaaaatgattgtacaaatatcatttctctt 39901589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 222
Target Start/End: Complemental strand, 41851004 - 41850945
Alignment:
Q  163 agtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttc 222  Q
    |||||||||  |||||||||||||||||||||| |||  || ||||||||||||||||||    
T  41851004 agtatgagagggagggttgtttcaaaagttgtcaaaatatggttgtacaaatatcatttc 41850945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 227
Target Start/End: Complemental strand, 48405476 - 48405407
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctta 227  Q
    |||| ||||||||| |||  |||||| |||||||||||  ||| || |||||||||||||||||||||||    
T  48405476 atgtgagtatgagagagaaagttgttacaaaagttgtcacaaaatggttgtacaaatatcatttctctta 48405407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 52454126 - 52454167
Alignment:
Q  185 caaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    |||||||||||  |||||||||||||||||||||||||||||    
T  52454126 caaaagttgtcacaaattgattgtacaaatatcatttctctt 52454167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 34021495 - 34021535
Alignment:
Q  185 caaaagttgtcgaaaattgattgtacaaatatcatttctct 225  Q
    |||||||||||  ||||||||||||||||||||||||||||    
T  34021495 caaaagttgtcacaaattgattgtacaaatatcatttctct 34021535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 114
Target Start/End: Complemental strand, 37073841 - 37073769
Alignment:
Q  42 agaggattgatatttgtacatctaatattagacaactttggtgacagccacttttctcctcttgtgattggac 114  Q
    |||||| ||||||||||||| ||||||||||| || ||||||||    ||||||||| ||||||| |||||||    
T  37073841 agaggaatgatatttgtacaactaatattagataattttggtgatcatcacttttctgctcttgttattggac 37073769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 224
Target Start/End: Original strand, 5393846 - 5393905
Alignment:
Q  165 tatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctc 224  Q
    ||||||| ||||||||||  ||||||||||   ||| |||||||||||||||||||||||    
T  5393846 tatgagagagagggttgtcccaaaagttgtaagaaaatgattgtacaaatatcatttctc 5393905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 225
Target Start/End: Original strand, 19150324 - 19150391
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctct 225  Q
    |||||| ||||||| |||  |||||  ||||||||||  |||| ||||||||||||||||||||||||    
T  19150324 atgtaaatatgagagagaaagttgtcacaaaagttgttaaaaaatgattgtacaaatatcatttctct 19150391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 23378042 - 23377979
Alignment:
Q  164 gtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctta 227  Q
    |||||||| |||||||||| |||||||||||   ||| || ||| |||||||||||||||||||    
T  23378042 gtatgagagagagggttgtctcaaaagttgtaagaaaatggttgcacaaatatcatttctctta 23377979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 39284687 - 39284738
Alignment:
Q  173 agagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctc 224  Q
    |||| |||||||||||||||||| |||| ||| | |||||||||||||||||    
T  39284687 agagagttgtttcaaaagttgtcaaaaagtgaatatacaaatatcatttctc 39284738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 212
Target Start/End: Complemental strand, 6976996 - 6976942
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaa 212  Q
    |||| ||||||| | |||||||||||| |||||||||| |||| |||||||||||    
T  6976996 atgtgagtatgatagagagggttgttttaaaagttgtcaaaaagtgattgtacaa 6976942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 21306070 - 21306024
Alignment:
Q  179 ttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctct 225  Q
    |||| ||||||||||||| ||| ||| ||||||||||||||||||||    
T  21306070 ttgtctcaaaagttgtcgcaaaatgactgtacaaatatcatttctct 21306024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 38017942 - 38018000
Alignment:
Q  168 gagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    |||| |||| ||||||||| |||||||| || | || ||||||||||||||||||||||    
T  38017942 gagagagagagttgtttcataagttgtcaaagagtggttgtacaaatatcatttctctt 38018000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 7246 - 7287
Alignment:
Q  185 caaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    |||||||||||  ||| |||||||||||||||||||||||||    
T  7246 caaaagttgtcagaaaatgattgtacaaatatcatttctctt 7287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 225
Target Start/End: Original strand, 3958053 - 3958090
Alignment:
Q  188 aagttgtcgaaaattgattgtacaaatatcatttctct 225  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  3958053 aagttgtcacaaattgattgtacaaatatcatttctct 3958090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 35074123 - 35074164
Alignment:
Q  186 aaaagttgtcgaaaattgattgtacaaatatcatttctctta 227  Q
    ||||||||||  ||| ||||||||||||||||||||||||||    
T  35074123 aaaagttgtcccaaaatgattgtacaaatatcatttctctta 35074164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 36818995 - 36818954
Alignment:
Q  185 caaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  36818995 caaaagttgtcacaaattggttgtacaaatatcatttctctt 36818954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 46473166 - 46473125
Alignment:
Q  186 aaaagttgtcgaaaattgattgtacaaatatcatttctctta 227  Q
    ||||||||||| ||| || |||||||||||||||||||||||    
T  46473166 aaaagttgtcgcaaagtggttgtacaaatatcatttctctta 46473125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 53102935 - 53102976
Alignment:
Q  186 aaaagttgtcgaaaattgattgtacaaatatcatttctctta 227  Q
    ||||||||||  |||||||| |||||||||||||||||||||    
T  53102935 aaaagttgtcacaaattgatcgtacaaatatcatttctctta 53102976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 53473649 - 53473608
Alignment:
Q  185 caaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    |||||||| ||  |||||||||||||||||||||||||||||    
T  53473649 caaaagttatcacaaattgattgtacaaatatcatttctctt 53473608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 3069608 - 3069648
Alignment:
Q  187 aaagttgtcgaaaattgattgtacaaatatcatttctctta 227  Q
    |||||||||  |||||| |||||||||||||||||||||||    
T  3069608 aaagttgtcacaaattggttgtacaaatatcatttctctta 3069648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 27198193 - 27198233
Alignment:
Q  186 aaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    ||||||| || |||| |||||||||||||||||||||||||    
T  27198193 aaaagttatcaaaaaatgattgtacaaatatcatttctctt 27198233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 32931950 - 32931990
Alignment:
Q  185 caaaagttgtcgaaaattgattgtacaaatatcatttctct 225  Q
    |||||||||||  |||||| |||||||||||||||||||||    
T  32931950 caaaagttgtcacaaattggttgtacaaatatcatttctct 32931990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 38359339 - 38359379
Alignment:
Q  186 aaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    |||||||||  |||| |||||||||||||||||||||||||    
T  38359339 aaaagttgttaaaaaatgattgtacaaatatcatttctctt 38359379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 49361857 - 49361897
Alignment:
Q  186 aaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    |||||||||  |||| |||||||||||||||||||||||||    
T  49361857 aaaagttgtacaaaaatgattgtacaaatatcatttctctt 49361897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 226
Target Start/End: Original strand, 50559217 - 50559285
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    |||||||||||||| |||   ||||  ||||||||||| |||| |  ||||||||||||||||||||||    
T  50559217 atgtaagtatgagagagaaaattgtcacaaaagttgtcaaaaaatagttgtacaaatatcatttctctt 50559285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 43 - 110
Target Start/End: Original strand, 17777346 - 17777413
Alignment:
Q  43 gaggattgatatttgtacatctaatattagacaactttggtgacagccacttttctcctcttgtgatt 110  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  17777346 gaggagtgatatttgtacatctaatattagacaacttaggtgacagccacttttctcctcttgtgatt 17777413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 114
Target Start/End: Complemental strand, 3904365 - 3904293
Alignment:
Q  42 agaggattgatatttgtacatctaatattagacaactttggtgacagccacttttctcctcttgtgattggac 114  Q
    |||||| ||||||||||||| |||| ||||||||| |||| ||||| ||| ||||||||||||||||||||||    
T  3904365 agaggagtgatatttgtacaactaaaattagacaattttgatgacaaccaattttctcctcttgtgattggac 3904293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 158 - 227
Target Start/End: Original strand, 35883612 - 35883681
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctta 227  Q
    |||| ||||||||| | | ||||||||||||||||||| |||| | ||||||||||||||||||||||||    
T  35883612 atgtgagtatgagagatatggttgtttcaaaagttgtcaaaaaataattgtacaaatatcatttctctta 35883681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 1523187 - 1523252
Alignment:
Q  49 tgatatttgtacatctaatattagacaactttggtgacagccacttttctcctcttgtgattggac 114  Q
    ||||||||||||| |||||||||||| | |||| ||||| ||||||||||||| | ||||||||||    
T  1523187 tgatatttgtacaactaatattagacgattttgatgacaaccacttttctcctgtagtgattggac 1523252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 2279218 - 2279283
Alignment:
Q  49 tgatatttgtacatctaatattagacaactttggtgacagccacttttctcctcttgtgattggac 114  Q
    |||||||||||   ||||||||| |||||||||||||||  || ||||||||||||||||||||||    
T  2279218 tgatatttgtatcactaatattatacaactttggtgacaatcatttttctcctcttgtgattggac 2279283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 1922427 - 1922495
Alignment:
Q  155 catatgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttct 223  Q
    ||||||| ||||||||| ||||||||||  ||||| || || |||| ||||||||||||||||||||||    
T  1922427 catatgtgagtatgagagagagggttgtcacaaaaattatcaaaaagtgattgtacaaatatcatttct 1922495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 224
Target Start/End: Complemental strand, 3672406 - 3672341
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctc 224  Q
    |||| ||||||||||||||  ||||  ||||||||||| ||||||||| ||||||||||||||||||    
T  3672406 atgtgagtatgagatagaga-ttgtcacaaaagttgtcaaaaattgatggtacaaatatcatttctc 3672341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 33694221 - 33694275
Alignment:
Q  173 agagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctta 227  Q
    |||| ||||||| |||||||||  |||| ||||||||||||||||||||||||||    
T  33694221 agagagttgttttaaaagttgttaaaaagtgattgtacaaatatcatttctctta 33694275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 223
Target Start/End: Complemental strand, 40809559 - 40809498
Alignment:
Q  161 taagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttct 223  Q
    ||||||||||| ||| ||||||||||||||||||| | || | ||||||||||||||||||||    
T  40809559 taagtatgagagagatggttgtttcaaaagttgtcaataagt-attgtacaaatatcatttct 40809498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 226
Target Start/End: Complemental strand, 4466760 - 4466693
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    |||||| ||||||| |||  |||||| ||||||||||| |||| || ||||||||||||||||||||||    
T  4466760 atgtaaatatgagacagaaagttgttacaaaagttgtc-aaaactggttgtacaaatatcatttctctt 4466693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 38520018 - 38520066
Alignment:
Q  178 gttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    |||||||||||||||||| || | ||||||||||||||| |||||||||    
T  38520018 gttgtttcaaaagttgtcaaataatgattgtacaaatattatttctctt 38520066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 224
Target Start/End: Original strand, 29362724 - 29362763
Alignment:
Q  185 caaaagttgtcgaaaattgattgtacaaatatcatttctc 224  Q
    |||||||||||  |||||||||||||||||||||||||||    
T  29362724 caaaagttgtcataaattgattgtacaaatatcatttctc 29362763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 12021958 - 12022008
Alignment:
Q  176 gggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    |||||||||||||||||||| |||| | |||||| || |||||||||||||    
T  12021958 gggttgtttcaaaagttgtcaaaaagtaattgtaaaagtatcatttctctt 12022008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 17526465 - 17526415
Alignment:
Q  178 gttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctcttag 228  Q
    ||||||| |||| ||||| |||  |||||||||||||||||||||||||||    
T  17526465 gttgtttaaaaaattgtcaaaatatgattgtacaaatatcatttctcttag 17526415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 224
Target Start/End: Complemental strand, 40238476 - 40238438
Alignment:
Q  186 aaaagttgtcgaaaattgattgtacaaatatcatttctc 224  Q
    |||||||||| |||| |||||||||||||||||||||||    
T  40238476 aaaagttgtcaaaaaatgattgtacaaatatcatttctc 40238438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 224
Target Start/End: Original strand, 50528090 - 50528128
Alignment:
Q  186 aaaagttgtcgaaaattgattgtacaaatatcatttctc 224  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  50528090 aaaagttgtcacaaattgattgtacaaatatcatttctc 50528128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 1523299 - 1523364
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttct 223  Q
    |||||||||||| | |||  ||| ||||||||||| || |||| || |||||||||||||||||||    
T  1523299 atgtaagtatgacagagatagttatttcaaaagttatcaaaaagtggttgtacaaatatcatttct 1523364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 3558884 - 3558847
Alignment:
Q  186 aaaagttgtcgaaaattgattgtacaaatatcatttct 223  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  3558884 aaaagttgtcaaaaattgattgtataaatatcatttct 3558847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 5574265 - 5574329
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttct 223  Q
    |||| ||||||||| ||| ||||||  ||||||||||  |||| ||||||||||||||||||||||    
T  5574265 atgtgagtatgagagagaaggttgta-caaaagttgtacaaaaatgattgtacaaatatcatttct 5574329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 9987990 - 9987949
Alignment:
Q  185 caaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    ||||||||||| ||||||| |||| |||||||||||||||||    
T  9987990 caaaagttgtcaaaaattggttgttcaaatatcatttctctt 9987949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 227
Target Start/End: Complemental strand, 11947861 - 11947792
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctta 227  Q
    |||| ||||||||| |||  |||||  |||||||||||  ||| || |||||||||||||||||||||||    
T  11947861 atgtcagtatgagagagaaagttgtcacaaaagttgtcataaaatggttgtacaaatatcatttctctta 11947792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 227
Target Start/End: Complemental strand, 35369765 - 35369697
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctta 227  Q
    |||| |||||||||||||  |||||  ||||||||||  ||||| |||||| ||||||||||||||||||    
T  35369765 atgtgagtatgagatagaaagttgtcacaaaagttgtaaaaaat-gattgttcaaatatcatttctctta 35369697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 227
Target Start/End: Original strand, 36669415 - 36669444
Alignment:
Q  198 aaattgattgtacaaatatcatttctctta 227  Q
    ||||||||||||||||||||||||||||||    
T  36669415 aaattgattgtacaaatatcatttctctta 36669444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 6829815 - 6829863
Alignment:
Q  185 caaaagttgtcgaaaattgattgtacaaatatcatttctcttagctaaa 233  Q
    |||||||||||  |||||  ||||||||||||||||||||||| |||||    
T  6829815 caaaagttgtcacaaattagttgtacaaatatcatttctcttaactaaa 6829863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 25130742 - 25130706
Alignment:
Q  185 caaaagttgtcgaaaattgattgtacaaatatcattt 221  Q
    |||||||||||  ||||||||||||||||||||||||    
T  25130742 caaaagttgtcacaaattgattgtacaaatatcattt 25130706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 226
Target Start/End: Complemental strand, 30536057 - 30535989
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    |||| ||||||||| |||  |||||  ||||| ||||  |||| |||||||||||||||||||||||||    
T  30536057 atgtgagtatgagagagaaagttgtcacaaaaattgttaaaaaatgattgtacaaatatcatttctctt 30535989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 42577514 - 42577470
Alignment:
Q  182 tttcaaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    |||||||||||||  |||  |||||||||||||||||||||||||    
T  42577514 tttcaaaagttgttaaaatgtgattgtacaaatatcatttctctt 42577470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 44672063 - 44672103
Alignment:
Q  186 aaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    |||||||||  |||| |||||||||||||||||||||||||    
T  44672063 aaaagttgttaaaaaatgattgtacaaatatcatttctctt 44672103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 226
Target Start/End: Complemental strand, 48858889 - 48858821
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    |||| ||||||||| |||  |||||  ||||||||||| |||| || |||| |||||||||||||||||    
T  48858889 atgtgagtatgagagagaaagttgtcacaaaagttgtcaaaaagtggttgttcaaatatcatttctctt 48858821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 226
Target Start/End: Complemental strand, 48872444 - 48872377
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    |||| ||||||||| ||| |||||| | ||||||||||  ||| || ||||||||||||||||||||||    
T  48872444 atgtgagtatgagagagaaggttgtct-aaaagttgtcataaagtggttgtacaaatatcatttctctt 48872377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 226
Target Start/End: Original strand, 48983673 - 48983741
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    |||| ||||||||| |||  |||||  ||||||||||| |||| || |||| |||||||||||||||||    
T  48983673 atgtgagtatgagagagaaagttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctctt 48983741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 41 - 114
Target Start/End: Complemental strand, 844217 - 844144
Alignment:
Q  41 aagaggattgatatttgtacatctaatattagacaactttggtgacagccacttttctcctcttgtgattggac 114  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||  |||||||||||| ||||||||||||    
T  844217 aagaggagtgatatttgtacaactaatattagacaactttggtgacaatcacttttctccttttgtgattggac 844144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 43 - 114
Target Start/End: Complemental strand, 43057617 - 43057546
Alignment:
Q  43 gaggattgatatttgtacatctaatattagacaactttggtgacagccacttttctcctcttgtgattggac 114  Q
    ||||| ||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||| ||||||||    
T  43057617 gaggagtgatatttgtacaactaatattagacaaccttggtgacaaccacttttctcctcttgggattggac 43057546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 46 - 114
Target Start/End: Original strand, 6968604 - 6968672
Alignment:
Q  46 gattgatatttgtacatctaatattagacaactttggtgacagccacttttctcctcttgtgattggac 114  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||| ||||| || ||||||||||||    
T  6968604 gattgatatttgtacaactaatattagacaactttggtgacaaccacctttcttctattgtgattggac 6968672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 114
Target Start/End: Original strand, 34270226 - 34270297
Alignment:
Q  43 gaggattgatatttgtacatctaatattagacaactttggtgacagccacttttctcctcttgtgattggac 114  Q
    ||||| |||||| ||| || ||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  34270226 gaggaatgatatatgtgcaactaatattagacaactttggtgacaaccacttttctcctattgtgattggac 34270297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 158 - 227
Target Start/End: Complemental strand, 11148577 - 11148508
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctta 227  Q
    |||| ||||||||| |||  |||||  ||||||||||| |||||||||||||||||||||||||||||||    
T  11148577 atgtgagtatgagagagaatgttgtcacaaaagttgtcaaaaattgattgtacaaatatcatttctctta 11148508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 8728596 - 8728652
Alignment:
Q  168 gagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctc 224  Q
    |||| ||||||||||||||||||||||| |||| || ||||||||||||||||||||    
T  8728596 gagagagagggttgtttcaaaagttgtcaaaaagtggttgtacaaatatcatttctc 8728652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 26754643 - 26754709
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctc 224  Q
    |||| ||||||||| |||||||||| || ||||||||| ||| ||| ||||||||||||||||||||    
T  26754643 atgtgagtatgagagagagggttgtctccaaagttgtcaaaatttggttgtacaaatatcatttctc 26754709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 41621933 - 41621999
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctc 224  Q
    |||||||||||||| |   ||||||||||||||||||| |||| || ||||||||||||||||||||    
T  41621933 atgtaagtatgagagatgtggttgtttcaaaagttgtcaaaaagtggttgtacaaatatcatttctc 41621999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 43057504 - 43057434
Alignment:
Q  155 catatgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctct 225  Q
    ||||||| ||||||||| || | ||| |||||||||||||| |||| || |||||||||||||||||||||    
T  43057504 catatgtgagtatgagagagggagttatttcaaaagttgtcaaaaagtggttgtacaaatatcatttctct 43057434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 227
Target Start/End: Original strand, 30838370 - 30838439
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctta 227  Q
    |||| ||||||||| ||| ||||||||||||||||||| |||| |   ||||||||||||||||||||||    
T  30838370 atgtgagtatgagagagatggttgtttcaaaagttgtcaaaaagtagatgtacaaatatcatttctctta 30838439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 2629874 - 2629818
Alignment:
Q  168 gagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctc 224  Q
    |||| ||| ||||||||||||||||||| |||| || ||||||||||||||||||||    
T  2629874 gagagagaaggttgtttcaaaagttgtcaaaaaatggttgtacaaatatcatttctc 2629818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 224
Target Start/End: Complemental strand, 4719716 - 4719650
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctc 224  Q
    |||| ||||||||| | | ||||||  ||||||||||| ||||||| ||||||||||||||||||||    
T  4719716 atgtgagtatgagagaaaaggttgtcacaaaagttgtcaaaaattggttgtacaaatatcatttctc 4719650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 224
Target Start/End: Complemental strand, 35570879 - 35570813
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctc 224  Q
    |||| ||||||||| |||||||||| | ||||||| || ||| || |||||||||||||||||||||    
T  35570879 atgtgagtatgagagagagggttgtctaaaaagttatcaaaatttaattgtacaaatatcatttctc 35570813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 3109597 - 3109658
Alignment:
Q  163 agtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctc 224  Q
    ||||||||| |||  |||||  |||||||||||  |||||||||||||||||||||||||||    
T  3109597 agtatgagagagaatgttgtcacaaaagttgtcacaaattgattgtacaaatatcatttctc 3109658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 844081 - 844035
Alignment:
Q  179 ttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctct 225  Q
    ||||||||||||||||| |||| || |||| ||||||||||||||||    
T  844081 ttgtttcaaaagttgtcaaaaaatggttgtgcaaatatcatttctct 844035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 224
Target Start/End: Complemental strand, 17063903 - 17063865
Alignment:
Q  186 aaaagttgtcgaaaattgattgtacaaatatcatttctc 224  Q
    |||||||||| |||| |||||||||||||||||||||||    
T  17063903 aaaagttgtcaaaaaatgattgtacaaatatcatttctc 17063865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 32634747 - 32634705
Alignment:
Q  185 caaaagttgtcgaaaattgattgtacaaatatcatttctctta 227  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  32634747 caaaagttgtcacagattgattgtacaaatatcatttctctta 32634705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 34270544 - 34270590
Alignment:
Q  179 ttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctct 225  Q
    ||||||||||||||||  ||||||  |||||||||||||||||||||    
T  34270544 ttgtttcaaaagttgttaaaaatttgttgtacaaatatcatttctct 34270590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 15004734 - 15004795
Alignment:
Q  163 agtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctc 224  Q
    ||||||||| ||| | ||||||||||| ||||| |||| || |||| |||||||||||||||    
T  15004734 agtatgagagagatgattgtttcaaaaattgtcaaaaagtggttgtccaaatatcatttctc 15004795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 27440520 - 27440479
Alignment:
Q  183 ttcaaaagttgtcgaaaattgattgtacaaatatcatttctc 224  Q
    |||||||||||||  ||| |||||||||||||||||||||||    
T  27440520 ttcaaaagttgtcacaaaatgattgtacaaatatcatttctc 27440479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 27487926 - 27487885
Alignment:
Q  185 caaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    ||||||||||  |||||||||||| |||||||||||||||||    
T  27487926 caaaagttgttaaaaattgattgttcaaatatcatttctctt 27487885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 34674917 - 34674868
Alignment:
Q  163 agtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaa 212  Q
    ||||||||| ||| |||||||| ||||||||||||||| || ||||||||    
T  34674917 agtatgagaaagatggttgttttaaaagttgtcgaaaagtggttgtacaa 34674868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 226
Target Start/End: Complemental strand, 611930 - 611862
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    |||| ||||||||| |||  |||||  ||||||||||| |||| | ||||| |||||||||||||||||    
T  611930 atgtgagtatgagagagaaagttgtcacaaaagttgtcaaaaagtaattgttcaaatatcatttctctt 611862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 226
Target Start/End: Original strand, 6964415 - 6964443
Alignment:
Q  198 aaattgattgtacaaatatcatttctctt 226  Q
    |||||||||||||||||||||||||||||    
T  6964415 aaattgattgtacaaatatcatttctctt 6964443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 9594517 - 9594477
Alignment:
Q  185 caaaagttgtcgaaaattgattgtacaaatatcatttctct 225  Q
    |||||||||||  |||||| |||||||||||||||||||||    
T  9594517 caaaagttgtcacaaattggttgtacaaatatcatttctct 9594477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 226
Target Start/End: Complemental strand, 12401218 - 12401190
Alignment:
Q  198 aaattgattgtacaaatatcatttctctt 226  Q
    |||||||||||||||||||||||||||||    
T  12401218 aaattgattgtacaaatatcatttctctt 12401190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 227
Target Start/End: Complemental strand, 14126476 - 14126413
Alignment:
Q  163 agtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctta 227  Q
    ||||||||| ||| |||||| | ||||||||   |||||||||||||||||||||||||| ||||    
T  14126476 agtatgagagagaaggttgtat-aaaagttgcataaaattgattgtacaaatatcatttccctta 14126413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 40)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 44 - 114
Target Start/End: Original strand, 29471921 - 29471991
Alignment:
Q  44 aggattgatatttgtacatctaatattagacaactttggtgacagccacttttctcctcttgtgattggac 114  Q
    |||| ||||||||||||| ||||||||| ||||||||| ||||| ||||||||||||||||||||||||||    
T  29471921 aggagtgatatttgtacaactaatattatacaactttgttgacaaccacttttctcctcttgtgattggac 29471991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 42 - 114
Target Start/End: Original strand, 40874149 - 40874221
Alignment:
Q  42 agaggattgatatttgtacatctaatattagacaactttggtgacagccacttttctcctcttgtgattggac 114  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||   | ||||||||||||||||||||||    
T  40874149 agaggagtgatatttgtacaactaatattagacaactttggtgacaattatttttctcctcttgtgattggac 40874221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 43 - 113
Target Start/End: Original strand, 24727310 - 24727380
Alignment:
Q  43 gaggattgatatttgtacatctaatattagacaactttggtgacagccacttttctcctcttgtgattgga 113  Q
    ||||| |||||| |||||| ||||||||||||||||||| |||||| || |||||||||||||||||||||    
T  24727310 gaggagtgatatatgtacaactaatattagacaactttgatgacagacatttttctcctcttgtgattgga 24727380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 156 - 225
Target Start/End: Original strand, 43820744 - 43820813
Alignment:
Q  156 atatgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctct 225  Q
    |||||| ||||||||| ||| ||||||||||||||||||  |||| ||||||||||||||||||||||||    
T  43820744 atatgtgagtatgagaaagatggttgtttcaaaagttgtaaaaaaatgattgtacaaatatcatttctct 43820813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 22966845 - 22966784
Alignment:
Q  165 tatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    ||||||| |||||||||||||||||||| || |||| || ||||||||||||||||||||||    
T  22966845 tatgagagagagggttgtttcaaaagttatcaaaaagtggttgtacaaatatcatttctctt 22966784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 24727592 - 24727661
Alignment:
Q  155 catatgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctc 224  Q
    ||||||| | ||||||| |||| |||||||||||||||||| |||| || ||||||||||||||||||||    
T  24727592 catatgtgaatatgagagagagtgttgtttcaaaagttgtcaaaaagtggttgtacaaatatcatttctc 24727661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 113
Target Start/End: Original strand, 15123827 - 15123891
Alignment:
Q  49 tgatatttgtacatctaatattagacaactttggtgacagccacttttctcctcttgtgattgga 113  Q
    ||||||||||||| |||||||| || || |||||||||| |||||||||||||||| ||||||||    
T  15123827 tgatatttgtacaactaatatttgataattttggtgacaaccacttttctcctcttatgattgga 15123891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 25507311 - 25507255
Alignment:
Q  168 gagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctc 224  Q
    |||| ||||||||||||||||||||||| |||| || ||||||||||||||||||||    
T  25507311 gagagagagggttgtttcaaaagttgtcaaaaagtggttgtacaaatatcatttctc 25507255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 226
Target Start/End: Original strand, 29472036 - 29472103
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    |||| ||||||||| || |||||||||||||||||||| |||| ||||| |||||||||||||||||||    
T  29472036 atgtgagtatgagagagggggttgtttcaaaagttgtc-aaaagtgattttacaaatatcatttctctt 29472103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 225
Target Start/End: Original strand, 13453960 - 13454027
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctct 225  Q
    |||| ||||||||| ||||  ||||||||||||||||| |||| |||||||||| |||||||||||||    
T  13453960 atgtgagtatgagagagagaattgtttcaaaagttgtcaaaaagtgattgtacagatatcatttctct 13454027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 225
Target Start/End: Complemental strand, 40106675 - 40106608
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctct 225  Q
    |||||||||||||| ||| |||||||||| |||||||| || | || |||||||||||||||||||||    
T  40106675 atgtaagtatgagagagatggttgtttcataagttgtcaaagagtggttgtacaaatatcatttctct 40106608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 44 - 114
Target Start/End: Original strand, 10099341 - 10099411
Alignment:
Q  44 aggattgatatttgtacatctaatattagacaactttggtgacagccacttttctcctcttgtgattggac 114  Q
    |||| ||||||||||||| |||| |||||||||||||| |||||  || |||||||| |||||||||||||    
T  10099341 aggaatgatatttgtacaactaaaattagacaactttgatgacaatcaattttctccccttgtgattggac 10099411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 40874263 - 40874332
Alignment:
Q  155 catatgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctc 224  Q
    ||||||| ||||||||| | | ||||||||||||||||||  |||| || ||||||||||||||||||||    
T  40874263 catatgtgagtatgagagacatggttgtttcaaaagttgttaaaaaatggttgtacaaatatcatttctc 40874332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 31227570 - 31227622
Alignment:
Q  173 agagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctct 225  Q
    |||| |||||||||||||||||| |||| |||||||||| |||||||||||||    
T  31227570 agagagttgtttcaaaagttgtcaaaaagtgattgtacacatatcatttctct 31227622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 114
Target Start/End: Original strand, 10041320 - 10041390
Alignment:
Q  44 aggattgatatttgtacatctaatattagacaactttggtgacagccacttttctcctcttgtgattggac 114  Q
    |||| ||||||||||||| |||| | |||||||||||| |||||  || |||||||| |||||||||||||    
T  10041320 aggaatgatatttgtacaactaaaagtagacaactttgatgacaatcaattttctccccttgtgattggac 10041390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 15123941 - 15124007
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctc 224  Q
    |||| ||||||||| | | | ||||||||||||||||| |||| || ||||||||||||||||||||    
T  15123941 atgtgagtatgagagatatgattgtttcaaaagttgtcaaaaaatggttgtacaaatatcatttctc 15124007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 40602392 - 40602458
Alignment:
Q  155 catatgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcattt 221  Q
    ||||||| ||||||||||||| ||||| || | |||||||| |||| || |||||||||||||||||    
T  40602392 catatgtgagtatgagatagaaggttgctttataagttgtcaaaaagtggttgtacaaatatcattt 40602458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 9432110 - 9432175
Alignment:
Q  49 tgatatttgtacatctaatattagacaactttggtgacagccacttttctcctcttgtgattggac 114  Q
    ||||||||||||| |||| |||| ||||||||| ||||| | | |||||||||||| |||||||||    
T  9432110 tgatatttgtacaactaaaattaaacaactttgatgacaactaattttctcctcttatgattggac 9432175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 27307263 - 27307304
Alignment:
Q  185 caaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    |||||||||||  |||||||||||||||||||||||||||||    
T  27307263 caaaagttgtcacaaattgattgtacaaatatcatttctctt 27307304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 1352426 - 1352386
Alignment:
Q  186 aaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    |||||||||| |||||||||||| |||||||||||||||||    
T  1352426 aaaagttgtcaaaaattgattgttcaaatatcatttctctt 1352386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 37767778 - 37767838
Alignment:
Q  165 tatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctct 225  Q
    ||||||| ||| | ||||||||||||||||| |||| || ||||| |||||||||||||||    
T  37767778 tatgagagagatgattgtttcaaaagttgtcaaaaagtggttgtataaatatcatttctct 37767838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 45376236 - 45376292
Alignment:
Q  168 gagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctc 224  Q
    |||| ||||||||||  ||||||||||| |||| || ||||||||||||||||||||    
T  45376236 gagagagagggttgtcacaaaagttgtcaaaaagtggttgtacaaatatcatttctc 45376292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 224
Target Start/End: Original strand, 3196119 - 3196158
Alignment:
Q  185 caaaagttgtcgaaaattgattgtacaaatatcatttctc 224  Q
    |||||||||||  |||||||||||||||||||||||||||    
T  3196119 caaaagttgtcacaaattgattgtacaaatatcatttctc 3196158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 225
Target Start/End: Original strand, 7258567 - 7258634
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctct 225  Q
    |||||||||||||| |||   ||||| ||||||||||| || | ||||||||||||| ||||||||||    
T  7258567 atgtaagtatgagagagaaaattgttacaaaagttgtcaaagagtgattgtacaaatgtcatttctct 7258634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 226
Target Start/End: Original strand, 19695714 - 19695753
Alignment:
Q  187 aaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    ||||||||| |||| |||||||||||||||||||||||||    
T  19695714 aaagttgtcaaaaagtgattgtacaaatatcatttctctt 19695753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 34141501 - 34141439
Alignment:
Q  164 gtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctta 227  Q
    |||||||| ||| ||||||  ||||||||||  |||| ||||||||||||||||||||||||||    
T  34141501 gtatgagagagaaggttgta-caaaagttgtacaaaaatgattgtacaaatatcatttctctta 34141439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 228
Target Start/End: Complemental strand, 9979162 - 9979092
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctcttag 228  Q
    |||| ||||||||| ||| ||||||  ||||| ||||  |||| || ||||||||||||||||||||||||    
T  9979162 atgtgagtatgagagagatggttgtcacaaaaattgtgaaaaagtggttgtacaaatatcatttctcttag 9979092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 29168764 - 29168722
Alignment:
Q  185 caaaagttgtcgaaaattgattgtacaaatatcatttctctta 227  Q
    ||||||||||| |||| || |||||||||||||||||||||||    
T  29168764 caaaagttgtcaaaaaatggttgtacaaatatcatttctctta 29168722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 224
Target Start/End: Complemental strand, 30416402 - 30416360
Alignment:
Q  182 tttcaaaagttgtcgaaaattgattgtacaaatatcatttctc 224  Q
    |||||||| ||||| |||| |||||||||||||||||||||||    
T  30416402 tttcaaaaattgtcaaaaaatgattgtacaaatatcatttctc 30416360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 224
Target Start/End: Complemental strand, 31629670 - 31629604
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctc 224  Q
    |||| ||||| ||| ||| ||||||| ||||||||||| |||| |  ||||||||||||||||||||    
T  31629670 atgtgagtattagagagatggttgttccaaaagttgtcaaaaagtagttgtacaaatatcatttctc 31629604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 42821412 - 42821370
Alignment:
Q  185 caaaagttgtcgaaaattgattgtacaaatatcatttctctta 227  Q
    ||||| |||||||||| ||||||||||||||| ||||||||||    
T  42821412 caaaaattgtcgaaaaatgattgtacaaatataatttctctta 42821370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 14151652 - 14151705
Alignment:
Q  44 aggattgatatttgtacatctaatattagacaactttggtgacagccacttttc 97  Q
    |||| ||||||||||||| ||||| ||||||||||||  ||||| |||||||||    
T  14151652 aggaatgatatttgtacaactaatcttagacaacttttttgacaaccacttttc 14151705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 15610837 - 15610890
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtaca 211  Q
    |||| ||||||| | ||||||||||||||||||||||| |||| || |||||||    
T  15610837 atgtgagtatgatagagagggttgtttcaaaagttgtcaaaaaatggttgtaca 15610890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 227
Target Start/End: Complemental strand, 5031992 - 5031920
Alignment:
Q  155 catatgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctta 227  Q
    ||||||| ||||||||| |||  |||||  ||||||||||   ||| || |||||||||||||||||||||||    
T  5031992 catatgtgagtatgagagagaaagttgtcgcaaaagttgttacaaaatggttgtacaaatatcatttctctta 5031920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 15260367 - 15260307
Alignment:
Q  164 gtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctc 224  Q
    |||||||| |||| |||||  ||||||||||| |||| || |||| |||||||||||||||    
T  15260367 gtatgagagagagagttgtcacaaaagttgtctaaaagtggttgttcaaatatcatttctc 15260307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 29871382 - 29871426
Alignment:
Q  183 ttcaaaagttgtcgaaaattgattgtacaaatatcatttctctta 227  Q
    |||||||||||||  ||| | ||||||||||||||||||||||||    
T  29871382 ttcaaaagttgtcataaactaattgtacaaatatcatttctctta 29871426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 31415239 - 31415287
Alignment:
Q  177 ggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctct 225  Q
    ||||||||||||||||||| |||| | |  |||||||||||||||||||    
T  31415239 ggttgtttcaaaagttgtcaaaaagtaaacgtacaaatatcatttctct 31415287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 39285890 - 39285854
Alignment:
Q  187 aaagttgtcgaaaattgattgtacaaatatcatttct 223  Q
    ||||||||| |||| ||||||||||||||||||||||    
T  39285890 aaagttgtcaaaaagtgattgtacaaatatcatttct 39285854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 226
Target Start/End: Original strand, 41353542 - 41353570
Alignment:
Q  198 aaattgattgtacaaatatcatttctctt 226  Q
    |||||||||||||||||||||||||||||    
T  41353542 aaattgattgtacaaatatcatttctctt 41353570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 226
Target Start/End: Complemental strand, 44050081 - 44050013
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    |||| ||||||||| ||| ||||||  |||||||||||  ||| || |||||||| |||||||||||||    
T  44050081 atgtgagtatgagagagaaggttgtcacaaaagttgtcataaaatggttgtacaagtatcatttctctt 44050013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 158 - 227
Target Start/End: Original strand, 26629115 - 26629184
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctta 227  Q
    |||| ||||||||| ||||||||||||||||||||||| |||| || |||||||||||||||||||||||    
T  26629115 atgtgagtatgagagagagggttgtttcaaaagttgtcaaaaagtggttgtacaaatatcatttctctta 26629184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 37379333 - 37379398
Alignment:
Q  49 tgatatttgtacatctaatattagacaactttggtgacagccacttttctcctcttgtgattggac 114  Q
    ||||||||||||| |||||||||||| |||||||||||| | | ||||||||||||||||||||||    
T  37379333 tgatatttgtacaactaatattagacgactttggtgacaactatttttctcctcttgtgattggac 37379398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 158 - 226
Target Start/End: Original strand, 30170734 - 30170802
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    |||| ||||||||| ||| ||||||||||||||||||| |||| || ||||||||||||||||||||||    
T  30170734 atgtgagtatgagagagatggttgtttcaaaagttgtcaaaaagtggttgtacaaatatcatttctctt 30170802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 30170627 - 30170692
Alignment:
Q  49 tgatatttgtacatctaatattagacaactttggtgacagccacttttctcctcttgtgattggac 114  Q
    ||||||||||||| ||||| |||||||| |||||||||| ||| ||||||||| ||||||||||||    
T  30170627 tgatatttgtacaactaattttagacaattttggtgacaaccatttttctccttttgtgattggac 30170692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 8835890 - 8835941
Alignment:
Q  173 agagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctc 224  Q
    |||||||||||| |||||||||| |||| |||| ||||||||||||||||||    
T  8835890 agagggttgttttaaaagttgtcaaaaagtgatcgtacaaatatcatttctc 8835941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 220
Target Start/End: Original strand, 37379439 - 37379501
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatt 220  Q
    |||| ||||||||| ||| ||||||||||||||||||| |||| || || |||||||||||||    
T  37379439 atgtgagtatgagagagatggttgtttcaaaagttgtcaaaaagtggttctacaaatatcatt 37379501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 43066606 - 43066668
Alignment:
Q  165 tatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctta 227  Q
    ||||||| ||| | ||||||||||||||||  |||| || |||||||||||||||||||||||    
T  43066606 tatgagagagatgattgtttcaaaagttgttaaaaagtggttgtacaaatatcatttctctta 43066668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 227
Target Start/End: Complemental strand, 13592832 - 13592763
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctta 227  Q
    |||| ||||||||| | || |||||||||||||||||| |||| |   ||||||||||||||||||||||    
T  13592832 atgtgagtatgagagatagagttgtttcaaaagttgtcaaaaaataggtgtacaaatatcatttctctta 13592763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 224
Target Start/End: Complemental strand, 42652564 - 42652501
Alignment:
Q  161 taagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctc 224  Q
    ||||||||||| |||  ||||| | |||||||||| ||| || |||||||||||||||||||||    
T  42652564 taagtatgagagagaaagttgtcttaaaagttgtcaaaatttaattgtacaaatatcatttctc 42652501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 224
Target Start/End: Complemental strand, 4721795 - 4721729
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctc 224  Q
    |||| ||||||||| | | |||||| || ||||||||| ||| ||| ||||||||||||||||||||    
T  4721795 atgtgagtatgagagaaaaggttgtatccaaagttgtcaaaatttggttgtacaaatatcatttctc 4721729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 227
Target Start/End: Complemental strand, 7376572 - 7376503
Alignment:
Q  157 tatgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctta 227  Q
    ||||| ||||||||| |||  |||||| ||||||||||   |||||| |||||||||||||||||||||||    
T  7376572 tatgtgagtatgagagagaaagttgtt-caaaagttgttagaaattggttgtacaaatatcatttctctta 7376503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 39719281 - 39719323
Alignment:
Q  186 aaaagttgtcgaaaattgattgtacaaatatcatttctcttag 228  Q
    ||||||||||  |||||||||||||||||||||||||| ||||    
T  39719281 aaaagttgtcacaaattgattgtacaaatatcatttcttttag 39719323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 41273554 - 41273512
Alignment:
Q  185 caaaagttgtcgaaaattgattgtacaaatatcatttctctta 227  Q
    |||||||||||  |||||| |||||||||||||||||||||||    
T  41273554 caaaagttgtcacaaattgtttgtacaaatatcatttctctta 41273512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 2730973 - 2731034
Alignment:
Q  165 tatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    ||||||| |||  |||||| ||||||||||| |||| || |||| |||||||||||||||||    
T  2730973 tatgagagagaaagttgttacaaaagttgtcaaaaagtggttgttcaaatatcatttctctt 2731034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 5740807 - 5740848
Alignment:
Q  186 aaaagttgtcgaaaattgattgtacaaatatcatttctctta 227  Q
    |||||||||| |||| || |||||||||||||||||||||||    
T  5740807 aaaagttgtcaaaaagtggttgtacaaatatcatttctctta 5740848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 5771992 - 5772045
Alignment:
Q  173 agagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    |||| |||||| ||||||||||| |||| || |||| |||||||||||||||||    
T  5771992 agagagttgttacaaaagttgtcaaaaaatggttgttcaaatatcatttctctt 5772045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 13884194 - 13884231
Alignment:
Q  187 aaagttgtcgaaaattgattgtacaaatatcatttctc 224  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  13884194 aaagttgtcaaaaaatgattgtacaaatatcatttctc 13884231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 20288572 - 20288531
Alignment:
Q  185 caaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  20288572 caaaagttgtcacaaattggttgtacaaatatcatttctctt 20288531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 20996179 - 20996220
Alignment:
Q  185 caaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    ||||||||||  |||| |||||||||||||||||||||||||    
T  20996179 caaaagttgttcaaaaatgattgtacaaatatcatttctctt 20996220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 21075201 - 21075160
Alignment:
Q  185 caaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  21075201 caaaagttgtcacaaattggttgtacaaatatcatttctctt 21075160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 218
Target Start/End: Complemental strand, 14127310 - 14127250
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatca 218  Q
    |||| ||||||||| ||| ||||||| ||||| ||||| |||| || ||||||||||||||    
T  14127310 atgtgagtatgagagagatggttgttccaaaaattgtcaaaaagtggttgtacaaatatca 14127250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 226
Target Start/End: Complemental strand, 33817182 - 33817154
Alignment:
Q  198 aaattgattgtacaaatatcatttctctt 226  Q
    |||||||||||||||||||||||||||||    
T  33817182 aaattgattgtacaaatatcatttctctt 33817154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 35701838 - 35701901
Alignment:
Q  163 agtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctta 227  Q
    ||||||||| ||| ||||||  ||||||||||  |||| || |||||||||||||||||||||||    
T  35701838 agtatgagagagaaggttgta-caaaagttgtacaaaaatggttgtacaaatatcatttctctta 35701901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 36064069 - 36064029
Alignment:
Q  185 caaaagttgtcgaaaattgattgtacaaatatcatttctct 225  Q
    |||||||||||  ||| ||||||||||||||||||||||||    
T  36064069 caaaagttgtcacaaaatgattgtacaaatatcatttctct 36064029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 37392151 - 37392191
Alignment:
Q  187 aaagttgtcgaaaattgattgtacaaatatcatttctctta 227  Q
    ||||||||| |||| || |||||||||||||||||||||||    
T  37392151 aaagttgtcaaaaaatggttgtacaaatatcatttctctta 37392191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 225
Target Start/End: Complemental strand, 44010832 - 44010804
Alignment:
Q  197 aaaattgattgtacaaatatcatttctct 225  Q
    |||||||||||||||||||||||||||||    
T  44010832 aaaattgattgtacaaatatcatttctct 44010804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 46)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 42 - 114
Target Start/End: Original strand, 54221945 - 54222017
Alignment:
Q  42 agaggattgatatttgtacatctaatattagacaactttggtgacagccacttttctcctcttgtgattggac 114  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||| | | |||||| |||||||||||||||    
T  54221945 agaggagtgatatttgtacaactaatattagacaactttggtgacaactatttttcttctcttgtgattggac 54222017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 113
Target Start/End: Complemental strand, 35206342 - 35206280
Alignment:
Q  51 atatttgtacatctaatattagacaactttggtgacagccacttttctcctcttgtgattgga 113  Q
    ||||||||||| ||||||| |||||||| |||||| | |||||||||||||||||||||||||    
T  35206342 atatttgtacaactaatatcagacaactatggtgataaccacttttctcctcttgtgattgga 35206280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 45652817 - 45652765
Alignment:
Q  46 gattgatatttgtacatctaatattagacaactttggtgacagccacttttct 98  Q
    |||||||||||||||||||||||||||||||||||| ||| | ||||||||||    
T  45652817 gattgatatttgtacatctaatattagacaactttgatgataaccacttttct 45652765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 114
Target Start/End: Original strand, 10762411 - 10762462
Alignment:
Q  63 ctaatattagacaactttggtgacagccacttttctcctcttgtgattggac 114  Q
    ||||||||||||||| ||||||||| ||||||||||||||||| ||||||||    
T  10762411 ctaatattagacaaccttggtgacaaccacttttctcctcttgggattggac 10762462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 226
Target Start/End: Complemental strand, 961342 - 961274
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    |||| ||||||||| |||| ||||||||||||||| || |||| | ||||||||||||| |||||||||    
T  961342 atgtgagtatgagagagagagttgtttcaaaagttatcaaaaaattattgtacaaatattatttctctt 961274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 17367506 - 17367446
Alignment:
Q  163 agtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttct 223  Q
    ||||||||| ||| ||||||||||||||||||| |||| || ||||| |||||||||||||    
T  17367506 agtatgagagagatggttgtttcaaaagttgtcaaaaagtggttgtataaatatcatttct 17367446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 226
Target Start/End: Complemental strand, 31221478 - 31221411
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    |||||||||||||| |||  ||||| | ||||||||||  |||||||||||||||||||||||||||||    
T  31221478 atgtaagtatgagagagaaagttgtat-aaaagttgtcacaaattgattgtacaaatatcatttctctt 31221411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 226
Target Start/End: Complemental strand, 35206234 - 35206166
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    |||| ||||| ||| |||| ||||||||||||||| || |||| |||||||||||| ||||||||||||    
T  35206234 atgtgagtataagagagagagttgtttcaaaagttatcaaaaagtgattgtacaaacatcatttctctt 35206166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 224
Target Start/End: Complemental strand, 9032845 - 9032780
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctc 224  Q
    |||||||||||||| |||  |||||  |||||||||||  |||||||||||||||||||||||||||    
T  9032845 atgtaagtatgagagagaaagttgta-caaaagttgtcacaaattgattgtacaaatatcatttctc 9032780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 40693628 - 40693694
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctc 224  Q
    |||| ||||||||| ||| |||||| |||||| ||||| |||||| |||||| ||||||||||||||    
T  40693628 atgtgagtatgagagagaaggttgtctcaaaaattgtcaaaaattaattgtataaatatcatttctc 40693694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 204
Target Start/End: Complemental strand, 45652707 - 45652661
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattga 204  Q
    |||| ||||||||||||||| ||||||||||||||||| ||||||||    
T  45652707 atgtgagtatgagatagaggtttgtttcaaaagttgtcaaaaattga 45652661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 52372197 - 52372263
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctc 224  Q
    |||| |||| ||||||||  ||| ||||||||||| || |||||| |||||||||||||||||||||    
T  52372197 atgtgagtaagagatagatagttatttcaaaagttatcaaaaattaattgtacaaatatcatttctc 52372263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 224
Target Start/End: Complemental strand, 56215671 - 56215605
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctc 224  Q
    |||| ||||||||| ||| | ||| ||||||||||||| |||| || ||||||||||||||||||||    
T  56215671 atgtgagtatgagagagatgattggttcaaaagttgtcaaaaagtggttgtacaaatatcatttctc 56215605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 114
Target Start/End: Complemental strand, 961452 - 961387
Alignment:
Q  49 tgatatttgtacatctaatattagacaactttggtgacagccacttttctcctcttgtgattggac 114  Q
    ||||||||||||| ||||||||| |||| |||||||| |  ||||||| |||| ||||||||||||    
T  961452 tgatatttgtacaactaatattaaacaattttggtgataatcacttttttccttttgtgattggac 961387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 3223028 - 3222987
Alignment:
Q  185 caaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    |||||||||||  |||||||||||||||||||||||||||||    
T  3223028 caaaagttgtcacaaattgattgtacaaatatcatttctctt 3222987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 5208359 - 5208408
Alignment:
Q  185 caaaagttgtcgaaaattgattgtacaaatatcatttctcttagctaaaa 234  Q
    |||||||||||  |||||| |||||||||||||||||||||| |||||||    
T  5208359 caaaagttgtcacaaattggttgtacaaatatcatttctctttgctaaaa 5208408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 7632494 - 7632535
Alignment:
Q  185 caaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    ||||||||||| |||||||||||| |||||||||||||||||    
T  7632494 caaaagttgtcaaaaattgattgttcaaatatcatttctctt 7632535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 44368234 - 44368275
Alignment:
Q  185 caaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    |||||||||||  |||||||||||||||||||||||||||||    
T  44368234 caaaagttgtcacaaattgattgtacaaatatcatttctctt 44368275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 15638200 - 15638160
Alignment:
Q  185 caaaagttgtcgaaaattgattgtacaaatatcatttctct 225  Q
    ||||||||||| |||| ||||||||||||||||||||||||    
T  15638200 caaaagttgtcaaaaaatgattgtacaaatatcatttctct 15638160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 226
Target Start/End: Complemental strand, 50291347 - 50291280
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    |||| ||||||||| ||| |||||| | |||||||||  |||| |||||||||||||||||||||||||    
T  50291347 atgtgagtatgagagagaaggttgtat-aaaagttgtacaaaaatgattgtacaaatatcatttctctt 50291280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 50831781 - 50831829
Alignment:
Q  178 gttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    |||||| ||||||||||| |||| || ||||||||||||||||||||||    
T  50831781 gttgttacaaaagttgtcaaaaagtggttgtacaaatatcatttctctt 50831829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 114
Target Start/End: Complemental strand, 5903241 - 5903178
Alignment:
Q  51 atatttgtacatctaatattagacaactttggtgacagccacttttctcctcttgtgattggac 114  Q
    |||||||||||  || ||||||| |||| | |||||| ||| ||||||||||||||||||||||    
T  5903241 atatttgtacaattattattagataactctagtgacaaccatttttctcctcttgtgattggac 5903178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 225
Target Start/End: Complemental strand, 21685976 - 21685937
Alignment:
Q  186 aaaagttgtcgaaaattgattgtacaaatatcatttctct 225  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  21685976 aaaagttgtcaaaaattgattttacaaatatcatttctct 21685937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 45511501 - 45511446
Alignment:
Q  42 agaggattgatatttgtacatctaatattagacaactttggtgacagccacttttc 97  Q
    |||||| ||||||||||||||| ||| ||| |||||||| |||||| |||||||||    
T  45511501 agaggagtgatatttgtacatccaattttaaacaacttttgtgacatccacttttc 45511446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 227
Target Start/End: Original strand, 8026785 - 8026827
Alignment:
Q  185 caaaagttgtcgaaaattgattgtacaaatatcatttctctta 227  Q
    |||||||||||  |||||||||||| |||||||||||||||||    
T  8026785 caaaagttgtcacaaattgattgtataaatatcatttctctta 8026827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 224
Target Start/End: Complemental strand, 24045310 - 24045244
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctc 224  Q
    |||| ||||||||| ||| ||||||  ||||||||||  ||||||| |||| |||||||||||||||    
T  24045310 atgtgagtatgagagagaaggttgtcgcaaaagttgtaaaaaattggttgtgcaaatatcatttctc 24045244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 24235359 - 24235317
Alignment:
Q  185 caaaagttgtcgaaaattgattgtacaaatatcatttctctta 227  Q
    ||||| |||||  ||||||||||||||||||||||||||||||    
T  24235359 caaaaattgtcacaaattgattgtacaaatatcatttctctta 24235317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 42915253 - 42915291
Alignment:
Q  187 aaagttgtcgaaaattgattgtacaaatatcatttctct 225  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  42915253 aaagttgtcaaaaagtgattgtacaaatatcatttctct 42915291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 114
Target Start/End: Complemental strand, 52832925 - 52832851
Alignment:
Q  40 aaagaggattgatatttgtacatctaatattagacaactttggtgacagccacttttctcctcttgtgattggac 114  Q
    |||||||| |||||| ||||||  ||| |||||||||||||| ||| | | | |||||| |||||||||||||||    
T  52832925 aaagaggagtgatatctgtacaaataaaattagacaactttgatgataactaattttcttctcttgtgattggac 52832851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 3078910 - 3078979
Alignment:
Q  155 catatgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctc 224  Q
    ||||||| ||||||||| |||  |||||  ||||||||||   ||| |||||||||||||||||||||||    
T  3078910 catatgtgagtatgagagagaaagttgtcacaaaagttgttacaaaatgattgtacaaatatcatttctc 3078979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 9162104 - 9162063
Alignment:
Q  186 aaaagttgtcgaaaattgattgtacaaatatcatttctctta 227  Q
    ||||||||||  ||| ||||||||||||||||||||||||||    
T  9162104 aaaagttgtcacaaaatgattgtacaaatatcatttctctta 9162063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 12387688 - 12387725
Alignment:
Q  187 aaagttgtcgaaaattgattgtacaaatatcatttctc 224  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  12387688 aaagttgtcaaaaaatgattgtacaaatatcatttctc 12387725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 226
Target Start/End: Original strand, 37727088 - 37727117
Alignment:
Q  197 aaaattgattgtacaaatatcatttctctt 226  Q
    ||||||||||||||||||||||||||||||    
T  37727088 aaaattgattgtacaaatatcatttctctt 37727117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 223
Target Start/End: Complemental strand, 40760139 - 40760074
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttct 223  Q
    |||||| ||| |||| |||| ||||||||||||||||| ||||| |||||| ||| ||| ||||||    
T  40760139 atgtaaatataagattgaggattgtttcaaaagttgtcaaaaatagattgttcaagtattatttct 40760074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 227
Target Start/End: Original strand, 50890079 - 50890147
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctta 227  Q
    |||| ||||||||| |||  |||||  ||||||||||| ||||| | |||||||||||||||||||||||    
T  50890079 atgtgagtatgagagagaaagttgtcacaaaagttgtcaaaaatag-ttgtacaaatatcatttctctta 50890147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 227
Target Start/End: Complemental strand, 51255812 - 51255743
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctta 227  Q
    |||| ||||||||| |||  |||||  ||||||||||| |||| || |||| ||||||||||||||||||    
T  51255812 atgtgagtatgagagagaaagttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctctta 51255743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 227
Target Start/End: Original strand, 53384372 - 53384401
Alignment:
Q  198 aaattgattgtacaaatatcatttctctta 227  Q
    ||||||||||||||||||||||||||||||    
T  53384372 aaattgattgtacaaatatcatttctctta 53384401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 1796405 - 1796365
Alignment:
Q  185 caaaagttgtcgaaaattgattgtacaaatatcatttctct 225  Q
    |||||||||||  |||||| |||||||||||||||||||||    
T  1796405 caaaagttgtcacaaattggttgtacaaatatcatttctct 1796365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 8810631 - 8810571
Alignment:
Q  164 gtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctc 224  Q
    |||||||| ||||||||||  ||||||||||   ||| || ||||||||||||||||||||    
T  8810631 gtatgagagagagggttgtcccaaaagttgtaagaaaatggttgtacaaatatcatttctc 8810571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 31092434 - 31092394
Alignment:
Q  185 caaaagttgtcgaaaattgattgtacaaatatcatttctct 225  Q
    |||||||| || || ||||||||||||||||||||||||||    
T  31092434 caaaagttttctaagattgattgtacaaatatcatttctct 31092394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 32012956 - 32012896
Alignment:
Q  164 gtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctc 224  Q
    |||||||| |||  |||||  ||||||||||| ||||||| |||| |||||||||||||||    
T  32012956 gtatgagagagaaagttgtcacaaaagttgtcaaaaattggttgttcaaatatcatttctc 32012896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 226
Target Start/End: Original strand, 44272816 - 44272883
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    |||| ||||||||| |||  ||||||| |||||||||| |||| |  ||||||||||||||||||||||    
T  44272816 atgtgagtatgagagagaaagttgttt-aaaagttgtcaaaaaatagttgtacaaatatcatttctctt 44272883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 50721777 - 50721817
Alignment:
Q  185 caaaagttgtcgaaaattgattgtacaaatatcatttctct 225  Q
    ||||||||||| ||||||| |||| ||||||||||||||||    
T  50721777 caaaagttgtcaaaaattggttgttcaaatatcatttctct 50721817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 51296222 - 51296262
Alignment:
Q  186 aaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    ||||||||||  ||| |||||||||||||||||||||||||    
T  51296222 aaaagttgtcataaagtgattgtacaaatatcatttctctt 51296262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 51377325 - 51377365
Alignment:
Q  185 caaaagttgtcgaaaattgattgtacaaatatcatttctct 225  Q
    |||||||||||  |||||| |||||||||||||||||||||    
T  51377325 caaaagttgtcacaaattggttgtacaaatatcatttctct 51377365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 55268033 - 55268073
Alignment:
Q  185 caaaagttgtcgaaaattgattgtacaaatatcatttctct 225  Q
    |||||||||||  |||||| |||||||||||||||||||||    
T  55268033 caaaagttgtcacaaattggttgtacaaatatcatttctct 55268073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1625 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold1625
Description:

Target: scaffold1625; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 158 - 227
Target Start/End: Original strand, 786 - 855
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctta 227  Q
    |||| ||||||||| ||| ||||||||||||||||||| |||| ||||||||||||||||||| ||||||    
T  786 atgtgagtatgagagagatggttgtttcaaaagttgtcaaaaaatgattgtacaaatatcattcctctta 855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 38662 - 38598
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttc 222  Q
    |||| ||||||||| ||||||||||||| ||||||||| ||| ||| ||||||||||||||||||    
T  38662 atgtgagtatgagagagagggttgtttccaaagttgtcaaaatttggttgtacaaatatcatttc 38598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 10840779 - 10840722
Alignment:
Q  163 agtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatt 220  Q
    ||||||||| ||||| ||||| ||||||||||| |||| | |||||||||||||||||    
T  10840779 agtatgagagagaggattgttccaaaagttgtcaaaaaataattgtacaaatatcatt 10840722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 13093682 - 13093629
Alignment:
Q  168 gagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcattt 221  Q
    |||| |||| |||||||||||||||||| |||| || |||||||||||||||||    
T  13093682 gagagagagagttgtttcaaaagttgtcaaaaagtggttgtacaaatatcattt 13093629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 31883329 - 31883378
Alignment:
Q  178 gttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctta 227  Q
    |||||| ||||||||||| |||| || |||||||||||||||||||||||    
T  31883329 gttgttacaaaagttgtcaaaaagtggttgtacaaatatcatttctctta 31883378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 226
Target Start/End: Original strand, 17551384 - 17551452
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    |||| ||||||||| |||  |||||| ||||||||||| |||| || |||| |||||||||||||||||    
T  17551384 atgtgagtatgagagagaaagttgttacaaaagttgtcaaaaaatggttgttcaaatatcatttctctt 17551452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 226
Target Start/End: Complemental strand, 20029327 - 20029259
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    |||| ||||||||| ||| ||||||||||||||||||  |||| || ||||| ||||||||||| ||||    
T  20029327 atgtgagtatgagagagaaggttgtttcaaaagttgttaaaaagtggttgtataaatatcatttttctt 20029259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 226
Target Start/End: Complemental strand, 1196095 - 1196056
Alignment:
Q  187 aaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    ||||||||| |||| |||||||||||||||||||||||||    
T  1196095 aaagttgtcaaaaagtgattgtacaaatatcatttctctt 1196056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 226
Target Start/End: Original strand, 3180026 - 3180065
Alignment:
Q  187 aaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    ||||||||| |||| |||||||||||||||||||||||||    
T  3180026 aaagttgtcaaaaaatgattgtacaaatatcatttctctt 3180065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 111
Target Start/End: Complemental strand, 13093789 - 13093742
Alignment:
Q  64 taatattagacaactttggtgacagccacttttctcctcttgtgattg 111  Q
    |||||||| | ||||||||||||| ||||||||||||| |||||||||    
T  13093789 taatattaaataactttggtgacaaccacttttctccttttgtgattg 13093742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 225
Target Start/End: Complemental strand, 34792087 - 34792021
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctct 225  Q
    |||| ||||||||| ||| ||||||  ||||||||||  |||| ||||||||||||||||||||||||    
T  34792087 atgtgagtatgagagagaaggttgta-caaaagttgtacaaaaatgattgtacaaatatcatttctct 34792021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 8505806 - 8505847
Alignment:
Q  185 caaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    ||||||||||| |||| ||||||| |||||||||||||||||    
T  8505806 caaaagttgtcaaaaaatgattgttcaaatatcatttctctt 8505847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 31204822 - 31204883
Alignment:
Q  165 tatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    ||||||| |||| ||| ||||||||||| || |||| || ||||| ||||||||||||||||    
T  31204822 tatgagagagagagttatttcaaaagttatcaaaaaatggttgtagaaatatcatttctctt 31204883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 31517202 - 31517243
Alignment:
Q  186 aaaagttgtcgaaaattgattgtacaaatatcatttctctta 227  Q
    |||||||||| |||| || |||||||||||||||||||||||    
T  31517202 aaaagttgtcaaaaagtggttgtacaaatatcatttctctta 31517243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 226
Target Start/End: Original strand, 2242027 - 2242095
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    |||| ||||||||| |||  |||||  ||||| ||||| |||| ||||||| |||||||||||||||||    
T  2242027 atgtgagtatgagagagaaagttgtcacaaaaattgtcaaaaaatgattgttcaaatatcatttctctt 2242095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 15722536 - 15722576
Alignment:
Q  186 aaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    ||||||||||  ||| |||||||||||||||||||||||||    
T  15722536 aaaagttgtcacaaaatgattgtacaaatatcatttctctt 15722576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 26554539 - 26554492
Alignment:
Q  179 ttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctta 227  Q
    |||| |||||||||||| |||||||||||||| ||||||||| ||||||    
T  26554539 ttgtctcaaaagttgtctaaaattgattgtac-aatatcattcctctta 26554492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 226
Target Start/End: Complemental strand, 33683566 - 33683498
Alignment:
Q  158 atgtaagtatgagatagagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctctt 226  Q
    |||| ||||||||| ||||||| ||||||||||||||| |||| | | | || ||||||||||| ||||    
T  33683566 atgtgagtatgagagagagggtagtttcaaaagttgtcaaaaaataaatatataaatatcatttatctt 33683498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0635 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0635
Description:

Target: scaffold0635; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 5750 - 5680
Alignment:
Q  44 aggattgatatttgtacatctaatattagacaactttggtgacagccacttttctcctcttgtgattggac 114  Q
    |||| ||||||||||||| |||| | |||||||||||| |||||  || |||||||| |||||||||||||    
T  5750 aggaatgatatttgtacaactaaaagtagacaactttgatgacaatcaattttctccccttgtgattggac 5680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 223
Target Start/End: Original strand, 15851 - 15901
Alignment:
Q  173 agagggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttct 223  Q
    |||||||||||||||||||| || |||| | ||||||||||||| ||||||    
T  15851 agagggttgtttcaaaagttatcaaaaaattattgtacaaatattatttct 15901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 31623 - 31663
Alignment:
Q  187 aaagttgtcgaaaattgattgtacaaatatcatttctctta 227  Q
    ||||||||| |||| || |||||||||||||||||||||||    
T  31623 aaagttgtcaaaaaatggttgtacaaatatcatttctctta 31663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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