View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15589_low_40 (Length: 269)
Name: NF15589_low_40
Description: NF15589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15589_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 12813417 - 12813658
Alignment:
| Q |
18 |
actttagctatgtcattcaaatgggctactcatgtctcgtacacgatggccctaatgggtagcgggttctaatttagtgcttcatagatgttactaattt |
117 |
Q |
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| T |
12813417 |
actttagctatgtcattcaaatgggctactcatgtctcgtacacgttggccctaatgggtagcgggttctaatttagtgcttcatatatgttactaattt |
12813516 |
T |
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| Q |
118 |
agtttagtattttcagctatgtcatccaaacagattactcatgtttcgtacatgttagccctaacggatagcgagtttatttttggtcgggctaaaatgc |
217 |
Q |
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| T |
12813517 |
agtttagtatttttagctatgtcatccaaacaggttactcatgtttcgtacatgttagccctaacggatagcgagtttatttttggtggggctaaaatgc |
12813616 |
T |
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| Q |
218 |
cctgaaaaatccgatatgaaattttaaagcacataccctatg |
259 |
Q |
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| T |
12813617 |
cctgaaaaatccgagatgaaattttaaagcatataccctatg |
12813658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 190
Target Start/End: Original strand, 12813377 - 12813480
Alignment:
| Q |
86 |
ctaatttagtgcttcatagatgttactaatttagtttagtattttcagctatgtcatccaaacagattactcatgtttcgtacatgttagccctaacgga |
185 |
Q |
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| T |
12813377 |
ctaatttagtgtttcatgaatgttactaatttagtttagtacttt-agctatgtcattcaaatgggctactcatgtctcgtacacgttggccctaatggg |
12813475 |
T |
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| Q |
186 |
tagcg |
190 |
Q |
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| T |
12813476 |
tagcg |
12813480 |
T |
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