View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15589_low_42 (Length: 250)
Name: NF15589_low_42
Description: NF15589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15589_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 45082149 - 45081917
Alignment:
| Q |
1 |
tgttcagttcaagacttgcaacttccaaagtagtgtcttctgataatgtggatgtaaaatttgaactttaatgctattgnnnnnnnnnnnnn----gagg |
96 |
Q |
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| T |
45082149 |
tgttcaattcaagacttgcaacttccaaagtagtgtcttctgataatgtggatgtaaaaattgaaatttaatgctattgtttttttttttttttttgagg |
45082050 |
T |
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| Q |
97 |
gag-tttaatggtattgttgttaggacatcaaatgctattttcttccataaggatatagtatatataaggaatttaagttttgaaaagtaatgaataata |
195 |
Q |
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| T |
45082049 |
gagctttaatgctattgttgttaggacatcaaatgctattttcttccataaggatatagtatat----ggaatctaagttttgaaaagtaatgaataata |
45081954 |
T |
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| Q |
196 |
ccactattttactgatccattttatatgaactccatt |
232 |
Q |
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| T |
45081953 |
ccactattttactgatccattttatatgcacgccatt |
45081917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 45077853 - 45077777
Alignment:
| Q |
1 |
tgttcagttcaagacttgcaacttccaaagtagtgtcttctgataatgtggatgtaaaatttgaactttaatgctat |
77 |
Q |
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| T |
45077853 |
tgttcaattcaagacttgtaacttccaaagtagtgtcttctgataacatggatgtaaaattttaattttaatgctat |
45077777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 45074620 - 45074584
Alignment:
| Q |
1 |
tgttcagttcaagacttgcaacttccaaagtagtgtc |
37 |
Q |
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| T |
45074620 |
tgttcagttcaagacttgtaacttcaaaagtagtgtc |
45074584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 12698025 - 12697949
Alignment:
| Q |
1 |
tgttcagttcaagacttgcaacttccaaagtagtgtcttctgataatgtggatgtaaaatttgaactttaatgctatt |
78 |
Q |
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||||| |||||||||||| ||||| |||||||||||||||| ||| |||||||| || |||||||||||||||||| |
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| T |
12698025 |
tgttctgttcaagacttgtaactttcaaagtagtgtcttctattaacatggatgtataa-ttgaactttaatgctatt |
12697949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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