View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15589_low_43 (Length: 250)
Name: NF15589_low_43
Description: NF15589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15589_low_43 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0082 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 6145277 - 6145044
Alignment:
| Q |
1 |
tttgaagaataatcatagaatattgtggttgcttatgattcaagtcaagagttttctatttatctctataaagattatatgtaatatttcacaagaaaat |
100 |
Q |
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| T |
6145277 |
tttgaagaataatcatagaatattgtggttgcttatgattcaagtcaagagttttctatttatctctataaagattatatgtaatatttcacaagaaaat |
6145178 |
T |
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| Q |
101 |
tatgagtattttcaatgc-aaaagtaccacattctcttaatttttgtactaacatagtaacataccaatcttgtactgcggtgcccatgaaaagagtata |
199 |
Q |
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| T |
6145177 |
tatgagtattttcaatgcaaaaagtaccacattctcttaattt----------------acataccaatcttgtactgcggtgcccatgaaaatagtata |
6145094 |
T |
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| Q |
200 |
agttgacaaaacgtaacatacggggaaagtccttgttcttctctctcgaca |
250 |
Q |
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| T |
6145093 |
agttgacaaaacgtaacattcgggg-aagtccttgttctcctttctcgaca |
6145044 |
T |
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Target: scaffold0082 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0082
Description:
Target: scaffold0082; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 182 - 249
Target Start/End: Complemental strand, 11596 - 11529
Alignment:
| Q |
182 |
gcccatgaaaagagtataagttgacaaaacgtaacatacggggaaagtccttgttcttctctctcgac |
249 |
Q |
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| T |
11596 |
gcccatgaaaatagtatatgttgacaaaacgtaacattaggggaaagtccttgttgtcctttctcgac |
11529 |
T |
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