View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15589_low_44 (Length: 249)
Name: NF15589_low_44
Description: NF15589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15589_low_44 |
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| [»] scaffold1396 (1 HSPs) |
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| [»] scaffold0658 (1 HSPs) |
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Alignment Details
Target: scaffold1396 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: scaffold1396
Description:
Target: scaffold1396; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 628 - 391
Alignment:
| Q |
1 |
tttgtacctagcatttgggatgtttttcaattctctggtgcaactgccactgtttgtcttggttttatcttccctgctgcaattgctctaaggtgagatt |
100 |
Q |
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| T |
628 |
tttgtacctagcatttgggatgtttttcaattcactggtgcaactgccactgtttgtcttggttttatcttccctgctgcaattgctctaaggtgagttt |
529 |
T |
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| Q |
101 |
tcttactttatttaaatgtcattactgatcacattatgtttcattattttattttttgctacatcaatgtctgagtcactggttttccaaaattctgcgg |
200 |
Q |
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| T |
528 |
tcttactttatttaaatgtcattactgatcacattatgtttcattattttattttttgctacatcaatgtctgagtcactggttttccaaaattctgccg |
429 |
T |
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| Q |
201 |
agttatggcggtctattcttagtccaatgcatatttca |
238 |
Q |
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| T |
428 |
agttatagcggtctattcttagtccaatgcatatttca |
391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0658 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: scaffold0658
Description:
Target: scaffold0658; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 8400 - 8163
Alignment:
| Q |
1 |
tttgtacctagcatttgggatgtttttcaattctctggtgcaactgccactgtttgtcttggttttatcttccctgctgcaattgctctaaggtgagatt |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
8400 |
tttgtacctagcatttgggatgtttttcaattcactggtgcaactgccactgtttgtcttggttttatcttccctgctgcaattgctctaaggtaagttt |
8301 |
T |
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| Q |
101 |
tcttactttatttaaatgtcattactgatcacattatgtttcattattttattttttgctacatcaatgtctgagtcactggttttccaaaattctgcgg |
200 |
Q |
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| T |
8300 |
tcttactttatttaaatgtcattactgatcacattatgtttcattattttattttttgctacatcaatgtccgagtcactggttttccaaaattctgccg |
8201 |
T |
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| Q |
201 |
agttatggcggtctattcttagtccaatgcatatttca |
238 |
Q |
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| T |
8200 |
agttatggcggtctattcttagtccaatgcatatttca |
8163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 148
Target Start/End: Complemental strand, 24646961 - 24646884
Alignment:
| Q |
71 |
tccctgctgcaattgctctaaggtgagatttcttactttatttaaatgtcattactgatcacattatgtttcattatt |
148 |
Q |
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||||||||||| |||||||||||| | ||||||| ||||| ||||||| |||| |||||||||| |||||||||| |
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| T |
24646961 |
tccctgctgcacttgctctaaggttggttttcttattttatctaaatgttattattgatcacattgaatttcattatt |
24646884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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