View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15589_low_50 (Length: 240)
Name: NF15589_low_50
Description: NF15589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15589_low_50 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 34631977 - 34631756
Alignment:
| Q |
1 |
acaagatcaacaaattgttggaatcagataaggaagtagcaggtttgtaggaacaacattgcacaaaaatgttttaacttttccaaaacacactattagg |
100 |
Q |
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| T |
34631977 |
acaagatgaacaaattgttggaatcagataagggagtagcaggtttgtaggaacaacattgcacaaaaatgttttaacttttccaaaacacactattagg |
34631878 |
T |
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| Q |
101 |
aaaagaattaaatgagggattgaaattttagtgaaaacgaattgaatcctagctcccgatcgcacaaaatctatcaagagttaccacccgatcgttgtan |
200 |
Q |
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| T |
34631877 |
aaaagaattaaatgagggattgaaattttagtgaaaacgaattgaatcctagctcccgatcgcacaaaatctatcaagagttaccacccgatcgttgtat |
34631778 |
T |
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| Q |
201 |
nnnnnncatcgatctgccacat |
222 |
Q |
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|||||||||||||||| |
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| T |
34631777 |
ttttttcatcgatctgccacat |
34631756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 198
Target Start/End: Original strand, 2169429 - 2169472
Alignment:
| Q |
155 |
cccgatcgcacaaaatctatcaagagttaccacccgatcgttgt |
198 |
Q |
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|||||||||| ||||||||||||||||||| | ||||||||||| |
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| T |
2169429 |
cccgatcgcataaaatctatcaagagttacaatccgatcgttgt |
2169472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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