View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15589_low_55 (Length: 222)
Name: NF15589_low_55
Description: NF15589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15589_low_55 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 6145536 - 6145738
Alignment:
| Q |
1 |
acactcaatgaagttatagctgccaatagccaatagaatttatccaaacgactactattcaaatcttcaccaaaccaacttttaccacttttacttgtca |
100 |
Q |
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| T |
6145536 |
acactcaatgtagttatagctgccaatagccaatagaatttatccaaacgactactattcaaatcttcaccaaaccaacttttaccacttttacttgtca |
6145635 |
T |
|
| Q |
101 |
catgatcaacaattgttatcaacaaactacttagaaaatttgcagctccaatcacactaaggtaaagtccaattcccaaacttctcattgaatcgggaac |
200 |
Q |
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| T |
6145636 |
catgatcaacaattgttatcaacaaactacttagaaaatttgcagctccaatcacactaaggtaaagtccaattcccaagcttctcattgaatcaggaac |
6145735 |
T |
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| Q |
201 |
ttg |
203 |
Q |
| |
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||| |
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| T |
6145736 |
ttg |
6145738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 12 - 205
Target Start/End: Original strand, 23692370 - 23692563
Alignment:
| Q |
12 |
agttatagctgccaatagccaatagaatttatccaaacgactactattcaaatcttcaccaaaccaacttttaccacttttacttgtcacatgatcaaca |
111 |
Q |
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|||||||||||||||||||||||| ||||| ||||| | ||||||||||||||| | |||||||||||| || ||| |||| |||| | |||||||||| |
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| T |
23692370 |
agttatagctgccaatagccaataaaatttgtccaatctactactattcaaatccttaccaaaccaactcttcccatttttctttgttatatgatcaaca |
23692469 |
T |
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| Q |
112 |
attgttatcaacaaactacttagaaaatttgcagctccaatcacactaaggtaaagtccaattcccaaacttctcattgaatcgggaacttggt |
205 |
Q |
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| T |
23692470 |
attgttatcaacacactactaataaaatttgcagctccaatcacacttaaataaaaagctatacctaagcttctcattgaatcaggaacttggt |
23692563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 204
Target Start/End: Original strand, 31074771 - 31074905
Alignment:
| Q |
70 |
ccaaaccaacttttaccacttttacttgtcacatgatcaacaattgttatcaacaaactacttagaaaatttgcagctccaatcacactaaggtaaagtc |
169 |
Q |
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|||| ||||||||||||| | || |||||| ||||| ||||| || || || |||||||||| ||| || || |||||||||||||||| || | | |
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| T |
31074771 |
ccaatccaacttttaccattcttttctgtcacttgatccacaatagtgattaaaaaactacttaagaaacttccaactccaatcacactaagatataatg |
31074870 |
T |
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| Q |
170 |
caattcccaaacttctcattgaatcgggaacttgg |
204 |
Q |
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| T |
31074871 |
ccattcccaaactcttcattgagtcaggaacttgg |
31074905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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