View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15589_low_6 (Length: 684)
Name: NF15589_low_6
Description: NF15589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15589_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 549; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 1 - 626
Target Start/End: Complemental strand, 26516610 - 26515987
Alignment:
| Q |
1 |
tgctagatgatgcatataataagtacgtgtttgatgaccagggattgccgaagtggtttctcgatgaggaaaggaaataccgtgtaccagttaagcctat |
100 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26516610 |
tgctagatgatgcatataataagtatgtgtttgatgaccagggattgccgaagtggtttctcgatgaggaaaggaaacaccgtgtaccagttaagcctat |
26516511 |
T |
|
| Q |
101 |
cacgaaagagcaagttgctgcaatgaaagcccaatttaaagaaattgatactcggcctgcaaagaaggtggctgaggccaaagcacgcaagaagcgtgtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26516510 |
cacgaaagagcaagttgctgcaatgaaagcccaatctaaagaaatt-atactcggcctgcaaagaaggtggctgaggccaaagcacgcaagaagcgtgtt |
26516412 |
T |
|
| Q |
201 |
gctatgaggaagattgagaaaatacgcaagaaggccaatgctatatcagatcagtcagacatatccaatcgttcaaagagtaagcaaattgatcgactat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
26516411 |
gctatgaggaagattgagaaaatacgcaagaaggccaatgctatatcagatcagtcagacatatccgatcgttcaaagagtaagcaaattgatcgactat |
26516312 |
T |
|
| Q |
301 |
atnnnnnnngctgttccaaaaaggcctcagaaggagtatgtagttgcaaagaaaggtgtccaagttaagactggcaggggaaaagtccttgttgatcgca |
400 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26516311 |
ataaaaaat-ctgttccaaaaaggcctcagaaggagtatgtagttgcaaagaaaggtgtccaagttaagactggcaggggaaaagtccttgttgatcgca |
26516213 |
T |
|
| Q |
401 |
ggatgaagaaggatgtgaggaaaaatggaattggtaaggcaggcaaaagaggttccaatgcaaagggcaaggcaccaaagggtggcagggctccgaatgg |
500 |
Q |
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||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
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| T |
26516212 |
ggatgaagaagaatatgaggaaaaatggaattggtaaggcaggcaaaagaggttccaatgcaaagggaaaggcaccaaagggtggcagggctccgattgg |
26516113 |
T |
|
| Q |
501 |
caagatccctatgggaaaaggatcttcaaaggcctctgccaagaagggaagaaaataactgaaaataggttggtgcgcaatttcagtgatgagttgtctt |
600 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26516112 |
aaagatccctatgggaaaaggatcttcaaaggcctctgccaagaagggaagaaaataactgaaaataggttggtgcgcaatttcagtgatgagttgtctt |
26516013 |
T |
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| Q |
601 |
actttccaagctaaactttgcgttca |
626 |
Q |
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||||||||||||||||||||| |||| |
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| T |
26516012 |
actttccaagctaaactttgctttca |
26515987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 487
Target Start/End: Complemental strand, 30373071 - 30372583
Alignment:
| Q |
1 |
tgctagatgatgcatataataagtacgtgtttgatgaccagggattgccgaagtggtttctcgatgaggaaaggaaataccgtgtaccagttaagcctat |
100 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||| | |
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| T |
30373071 |
tgctagatgatgcatataataaatacatgtttgatgaccagggattgcccaagtggtttctcgatgaggaaagaaaacaccgtgtaccagttaagcctgt |
30372972 |
T |
|
| Q |
101 |
cacgaaagagcaagttgctgcaatgaaagcccaatttaaagaaattgatactcggcctgcaaagaaggtggctgaggccaaagcacgcaagaagcgtgtt |
200 |
Q |
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||| |||||| |||||||||| ||||| || |||||||||| |||||||||| | |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
30372971 |
cacaaaagaggaagttgctgctatgaaggcacaatttaaagcaattgatactagacctgcaaagaaggtggctgaggccaaagcacgaaagaagcgtgtt |
30372872 |
T |
|
| Q |
201 |
gctatgaggaagattgagaaaatacgcaagaaggccaatgctatatcagatcagtcagacatatccaatcgttcaaagagtaagcaaattgatcgactat |
300 |
Q |
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|| |||||||||||||||||| | |||||||||||||| ||||||||||||||| |||||||||| ||||||| ||||||||||||||||| ||||| | |
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| T |
30372871 |
gcaatgaggaagattgagaaagtccgcaagaaggccaacgctatatcagatcagccagacatatctgatcgttccaagagtaagcaaattgaccgactct |
30372772 |
T |
|
| Q |
301 |
atnnnnnnngctgttccaaaaaggcctcagaaggagtatgtagttgcaaagaaaggtgtccaagttaagactggcaggggaaaagtccttgttgatcgca |
400 |
Q |
| |
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|| || ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||| | ||||||||||||||||||||||| |
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| T |
30372771 |
at-aaaaacgcagttccaaaaaggcctcaaaaggagtatgtaactgcaaagaaaggtgtccaagttaaggctggtaagggaaaagtccttgttgatcgca |
30372673 |
T |
|
| Q |
401 |
ggatgaagaaggatgtgaggaaaaatggaattggtaaggcaggcaaaagaggttccaatgcaaag---ggcaaggcaccaaagggtggca |
487 |
Q |
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||||||||| |||| |||||||| ||| || ||||||| |||||||||||||||||| |||||| ||||||||||||||||| |||| |
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| T |
30372672 |
ggatgaagagtgatgcgaggaaaagtggtatgggtaagggaggcaaaagaggttccaaggcaaagggcggcaaggcaccaaagggcggca |
30372583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 540 - 620
Target Start/End: Complemental strand, 30372497 - 30372417
Alignment:
| Q |
540 |
caagaagggaagaaaataactgaaaataggttggtgcgcaatttcagtgatgagttgtcttactttccaagctaaactttg |
620 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||| |||||||||||||||||| || |||||||||||| ||| |||| |
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| T |
30372497 |
caagaagggaaggaaataactgaaaataggttggtgcacaatttcagtgatgagttttcctactttccaagccaaattttg |
30372417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 466 - 504
Target Start/End: Complemental strand, 30372586 - 30372548
Alignment:
| Q |
466 |
ggcaaggcaccaaagggtggcagggctccgaatggcaag |
504 |
Q |
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||||||||||||||||||||||||||||| | ||||||| |
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| T |
30372586 |
ggcaaggcaccaaagggtggcagggctccaagtggcaag |
30372548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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