View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15589_low_8 (Length: 612)
Name: NF15589_low_8
Description: NF15589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15589_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 562; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 17 - 598
Target Start/End: Original strand, 39641748 - 39642329
Alignment:
| Q |
17 |
accatcagcagaccaaaaccaatgagcaacaatcggataaactaaacctgttagaaaagaagaataaatcaaataagaaacaaattgtgttctctcagca |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39641748 |
accatcagcagaccaaaaccaatgagcaacaatcggataaactaaacctgttagaaaagacgaataaatcaaataagaaacaaattgtgttctctcagca |
39641847 |
T |
|
| Q |
117 |
attgaaccactagtgattcctgctgcagcaattgcaaaagcccattgatatagaaaatatccataatcaaaagactgagaaggaaaatcactaagaccga |
216 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39641848 |
attgaaccactagtgattcctgctgaagcaattgcaaaagcccattgatatagaaaatatccataatcaaaagactgagaaggaaaatcactaagaccga |
39641947 |
T |
|
| Q |
217 |
aaaaatgttttccaatgaaaccattagaaggtgtgccgaaagcaaaggcaaacccgaaaatatagaaaaagaggccgcctgtggctgcatcaagaacatt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
39641948 |
aaaaatgttttccaatgaaaccattagaaggtgtgccgaaagcaaaggcaaacccgaaaatatagaaaaagatgccgcctgtggctgcatcaagaacatt |
39642047 |
T |
|
| Q |
317 |
ggttaacataatattcatggtgtttttggcacgaacggaacctgcacaaagcatggcaaaaccgagttgcatggcaaaaacaaggtaagaagagaagaga |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39642048 |
ggttaacataatattcatggtgtttttggcacgaacggaacctgcacaaagcatggcaaaaccgagttgcatggcaaaaacaaggtaagaagagaagaga |
39642147 |
T |
|
| Q |
417 |
aggtaggtgttgtcaacggcataggttgtgtcaatgaatttgtttgcaacggcattaaagccgttgcagatgtattcggcagcggctgtggaatttgcac |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39642148 |
aggtaggtgttgtcaacggcataggttgtgtcaatgaatttgtttgcaacggcattaaagccgttgcagatgtattcggcagcggctgtggaatttgcac |
39642247 |
T |
|
| Q |
517 |
cgctgccgaggagagcgttgaggtcggaggcggagcaggtgaaagaagccatcgtgaactgaactagaatataggatctgtg |
598 |
Q |
| |
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| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39642248 |
cactgccgaggagagtgttgaggtcggaggcggagcaggtgaaagaagccatcgtgaactgaactagaatataggatctgtg |
39642329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 17 - 568
Target Start/End: Original strand, 46669945 - 46670496
Alignment:
| Q |
17 |
accatcagcagaccaaaaccaatgagcaacaatcggataaactaaacctgttagaaaagaagaataaatcaaataagaaacaaattgtgttctctcagca |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||| || |||||||||||||||||||| || ||||||||||||||| |
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| T |
46669945 |
accatcagcagaccaaaaccaatgagcaacaattggataaactaaaccggttaaaaacgacgaataaatcaaataagaaacgaactgtgttctctcagca |
46670044 |
T |
|
| Q |
117 |
attgaaccactagtgattcctgctgcagcaattgcaaaagcccattgatatagaaaatatccataatcaaaagactgagaaggaaaatcactaagaccga |
216 |
Q |
| |
|
||||| ||||| ||||| |||||||||||||| ||||||||||||||| | || ||| | || ||||||||||| || ||||| |||||| ||||||| | |
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| T |
46670045 |
attgatccacttgtgatccctgctgcagcaatggcaaaagcccattgaaagaggaaaaaaccgtaatcaaaagattgtgaagggaaatcagtaagaccaa |
46670144 |
T |
|
| Q |
217 |
aaaaatgttttccaatgaaaccattagaaggtgtgccgaaagcaaaggcaaacccgaaaatatagaaaaagaggccgcctgtggctgcatcaagaacatt |
316 |
Q |
| |
|
||||||||||||| |||||||| || |||||||| || ||||| | |||||| || |||| ||||||||| | || ||| | || |||||||||||||| |
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| T |
46670145 |
aaaaatgttttcctatgaaaccgtttgaaggtgttccaaaagctagggcaaaaccaaaaacatagaaaaaaataccacctattgcggcatcaagaacatt |
46670244 |
T |
|
| Q |
317 |
ggttaacataatattcatggtgtttttggcacgaacggaacctgcacaaagcatggcaaaaccgagttgcatggcaaaaacaaggtaagaagagaagaga |
416 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||| ||||| ||||||||||| |||||||| ||||||||||||||||||||||||| ||||| ||| |
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| T |
46670245 |
ggttaacataatgttcatagtgtttttggcacgaacagaaccggcacaaagcatagcaaaacctagttgcatggcaaaaacaaggtaagctgagaataga |
46670344 |
T |
|
| Q |
417 |
aggtaggtgttgtcaacggcataggttgtgtcaatgaatttgtttgcaacggcattaaagccgttgcagatgtattcggcagcggctgtggaatttgcac |
516 |
Q |
| |
|
||||| |||||||| || ||||||| ||||| |||||||||||||| |||||||| |||||| |||||||||||||||||||||||||| ||||| | |
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| T |
46670345 |
aggtaagtgttgtcgacagcataggaagtgtcgatgaatttgtttgcgacggcattgaagccgccacagatgtattcggcagcggctgtggagtttgcgc |
46670444 |
T |
|
| Q |
517 |
cgctgccgaggagagcgttgaggtcggaggcggagcaggtgaaagaagccat |
568 |
Q |
| |
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| |||||||||||||| ||||||||||||||| |||||||||| |||||| |
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| T |
46670445 |
ttccgccgaggagagcgtggaggtcggaggcggaacaggtgaaagtagccat |
46670496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 5e-30; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 210 - 433
Target Start/End: Original strand, 17091218 - 17091441
Alignment:
| Q |
210 |
agaccgaaaaaatgttttccaatgaaaccattagaaggtgtgccgaaagcaaaggcaaacccgaaaatatagaaaaagaggccgcctgtggctgcatcaa |
309 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| |||||||| ||||| ||||||||||| ||||| | |||| | || | ||||| | || || || | |
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| T |
17091218 |
agaccgaagaaatgttttcctatgaaaccatttgaaggtgttccgaaggcaaaggcaaaaccgaagagatagtagaaaacaccgccagcagcggcgtcga |
17091317 |
T |
|
| Q |
310 |
gaacattggttaacataatattcatggtgtttttggcacgaacggaacctgcacaaagcatggcaaaaccgagttgcatggcaaaaacaaggtaagaaga |
409 |
Q |
| |
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||||||| || | ||| || ||||||||||| || |||||||| ||||| ||||| |||||||||||||| |||||||| | || |||||||||| || |
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| T |
17091318 |
gaacatttgtgagcatgatgttcatggtgttcttagcacgaactgaaccagcacagagcatggcaaaaccaagttgcatagagaagacaaggtaagctga |
17091417 |
T |
|
| Q |
410 |
gaagagaaggtaggtgttgtcaac |
433 |
Q |
| |
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||| | ||| |||||||||||||| |
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| T |
17091418 |
gaataaaagataggtgttgtcaac |
17091441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 306 - 430
Target Start/End: Original strand, 35416308 - 35416432
Alignment:
| Q |
306 |
tcaagaacattggttaacataatattcatggtgtttttggcacgaacggaacctgcacaaagcatggcaaaaccgagttgcatggcaaaaacaaggtaag |
405 |
Q |
| |
|
||||| |||||||| | ||| || ||||| ||||||||||| |||||||| || || || ||||| || ||||| || ||||||||||| || | |||| |
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| T |
35416308 |
tcaaggacattggtgagcatgatgttcatagtgtttttggctcgaacggagccagcgcagagcatagcgaaaccaagctgcatggcaaagactaaataag |
35416407 |
T |
|
| Q |
406 |
aagagaagagaaggtaggtgttgtc |
430 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
35416408 |
ctgagaagagaaggtaggtgttgtc |
35416432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 35416019 - 35416120
Alignment:
| Q |
17 |
accatcagcagaccaaaaccaatgagcaacaatcggataaactaaacctgttagaaaagaagaataaatcaaataagaaacaaattgtgttctctcagca |
116 |
Q |
| |
|
||||||||| ||||||| |||||| | ||| || |||||||| ||||| |||| ||||||||||| || | ||| | |||||||| |||||||| ||| |
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|
| T |
35416019 |
accatcagcggaccaaacccaatgcgaaacgatgggataaacaaaaccggttaagaaagaagaatatatgagataggcgacaaattgagttctctctgca |
35416118 |
T |
|
| Q |
117 |
at |
118 |
Q |
| |
|
|| |
|
|
| T |
35416119 |
at |
35416120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 301 - 421
Target Start/End: Original strand, 25545082 - 25545202
Alignment:
| Q |
301 |
ctgcatcaagaacattggttaacataatattcatggtgtttttggcacgaacggaacctgcacaaagcatggcaaaaccgagttgcatggcaaaaacaag |
400 |
Q |
| |
|
||||||||| |||||||| | ||| || ||||||| ||||||||||| || || |||||||| | ||||||||| || |||||||| |||| || | |
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| T |
25545082 |
ctgcatcaactacattggtgagcattatgttcatggcatttttggcacggacagatcctgcacatatcatggcaaagcctagttgcattacaaagactaa |
25545181 |
T |
|
| Q |
401 |
gtaagaagagaagagaaggta |
421 |
Q |
| |
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||| | ||||||||||||||| |
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|
| T |
25545182 |
gtaggtagagaagagaaggta |
25545202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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