View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15589_low_9 (Length: 592)
Name: NF15589_low_9
Description: NF15589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15589_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 23 - 279
Target Start/End: Original strand, 11749468 - 11749733
Alignment:
| Q |
23 |
atttgttgaatgtgaatgaatgatgcatatctctttgcaacgccattgtaaaactgtctgttcctatca---------tcatcatcatcactttcagttc |
113 |
Q |
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| T |
11749468 |
atttgttgaatgggaatgaatgatgcatatctctttgcaacgccatcgtaaaactgtttgttcctatcatcatcatcatcatcatcatcactttcagttc |
11749567 |
T |
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| Q |
114 |
cactttcattgctaacgatataatcaggcaatggattttgattctctatcatttctttcctctaatcatcgtcatcagtgacgtcactgataacgatgat |
213 |
Q |
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| T |
11749568 |
cactttcattgctaacgatataaccaagcaatggattttgattctctatcatttctttcctctgatcatcgtcatcagtgacgtcactgataacgatgat |
11749667 |
T |
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| Q |
214 |
gttgttatattcgaaaccgtgaccatgttgttgttgggttatagaagctacattgctgagtggagg |
279 |
Q |
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| T |
11749668 |
gttgttatattcgaaaccgtggccatgttgttgttgggttatagaagctacattgctgagtggagg |
11749733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 325 - 395
Target Start/End: Original strand, 11749767 - 11749837
Alignment:
| Q |
325 |
ttgtttttggttggtattggaattttcagttcttgggtccattttcttctgttcttgctttcccgcgtgaa |
395 |
Q |
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| T |
11749767 |
ttgtttttggttggtattggaattttcagttcttgggtccattttcttctgttcttgctttcccgcgtgaa |
11749837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 507 - 558
Target Start/End: Complemental strand, 47754405 - 47754354
Alignment:
| Q |
507 |
tttattgctgctacatcatatgcttctgctgcttcctccttggtgcctaaaa |
558 |
Q |
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| T |
47754405 |
tttattgctgctacatcatatgcttctgctgcttcctcttgagtgcctaaaa |
47754354 |
T |
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