View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1558_high_4 (Length: 272)

Name: NF1558_high_4
Description: NF1558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1558_high_4
NF1558_high_4
[»] chr5 (11 HSPs)
chr5 (19-255)||(13454097-13454333)
chr5 (73-213)||(13388972-13389112)
chr5 (79-202)||(13451069-13451192)
chr5 (73-209)||(13385151-13385287)
chr5 (61-209)||(13419639-13419787)
chr5 (88-218)||(13413285-13413415)
chr5 (94-216)||(13426523-13426645)
chr5 (89-169)||(13447230-13447310)
chr5 (73-206)||(13393379-13393512)
chr5 (103-206)||(13373384-13373487)
chr5 (94-187)||(13379199-13379292)
[»] chr4 (1 HSPs)
chr4 (69-146)||(47601524-47601601)


Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 13454333 - 13454097
Alignment:
Q  19 taaatcaagatataaattcaatttgaatctaattggtgtaaaaatatatgcagacatgaaattgttggcatagttacagaagtgggaagcaaagtgaaaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13454333 taaatcaagatataaattcaatttgaatctaattggtgtaaaaatatatgcagacatgaaattgttggcatagttacagaagtgggaagcaaagtgaaaa 13454234  T
Q  119 agttcaaagttggagacagagtaggtgtgggatgcttggttgattcttgtcactcatgtcaaaattgtgttgataatcttgagaattactgtccccaatt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13454233 agttcaaagttggagacagagtaggtgtgggatgcttggttgattcttgtcactcatgtcaaaattgtgttgataatcttgagaattactgtccccaatt 13454134  T
Q  219 gacactcactgatggttccaaatacagtgatggaacc 255  Q
    |||||||||||||||||||||||||||||||||||||    
T  13454133 gacactcactgatggttccaaatacagtgatggaacc 13454097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 73 - 213
Target Start/End: Original strand, 13388972 - 13389112
Alignment:
Q  73 catgaaattgttggcatagttacagaagtgggaagcaaagtgaaaaagttcaaagttggagacagagtaggtgtgggatgcttggttgattcttgtcact 172  Q
    ||||| |||||||| ||||| ||| | ||||||||||||||  |||||||||| |||||||||| ||||||||| || | | |||||||||| ||||  |    
T  13388972 catgagattgttggtatagtgacaaaggtgggaagcaaagtagaaaagttcaatgttggagacaaagtaggtgttggctacatggttgattcatgtcgat 13389071  T
Q  173 catgtcaaaattgtgttgataatcttgagaattactgtccc 213  Q
    ||||||||||||||||||| |||||||| ||||||||||||    
T  13389072 catgtcaaaattgtgttgacaatcttgaaaattactgtccc 13389112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 79 - 202
Target Start/End: Complemental strand, 13451192 - 13451069
Alignment:
Q  79 attgttggcatagttacagaagtgggaagcaaagtgaaaaagttcaaagttggagacagagtaggtgtgggatgcttggttgattcttgtcactcatgtc 178  Q
    |||||||| ||||||||| | || ||||||||||||  |||||||||| ||| |||||||||  ||||||||||||| |||||||||||||| ||||| |    
T  13451192 attgttgggatagttacacaggttggaagcaaagtggtaaagttcaaaattgaagacagagttagtgtgggatgcttcgttgattcttgtcaatcatgcc 13451093  T
Q  179 aaaattgtgttgataatcttgaga 202  Q
    ||||||||| | |||| |||||||    
T  13451092 aaaattgtgctaataaccttgaga 13451069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 73 - 209
Target Start/End: Original strand, 13385151 - 13385287
Alignment:
Q  73 catgaaattgttggcatagttacagaagtgggaagcaaagtgaaaaagttcaaagttggagacagagtaggtgtgggatgcttggttgattcttgtcact 172  Q
    ||||| |||||||| ||||| ||| | ||||||||||||||  |||||||||| |||||||||| ||||||||| || | | |  ||||||| ||||  |    
T  13385151 catgagattgttggtatagtgacaaaggtgggaagcaaagtagaaaagttcaatgttggagacaaagtaggtgttggctacataattgattcatgtcgat 13385250  T
Q  173 catgtcaaaattgtgttgataatcttgagaattactg 209  Q
    | ||||||||||||||||| |||||||| ||||||||    
T  13385251 cgtgtcaaaattgtgttgacaatcttgaaaattactg 13385287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 61 - 209
Target Start/End: Complemental strand, 13419787 - 13419639
Alignment:
Q  61 aatatatgcagacatgaaattgttggcatagttacagaagtgggaagcaaagtgaaaaagttcaaagttggagacagagtaggtgtgggatgcttggttg 160  Q
    |||| |||||| |||||| |||  || ||||| || || || |||||||||||  ||||||| ||||||||||||| ||| |||||||||| | ||||||    
T  13419787 aataaatgcaggcatgaacttgcgggtatagtaaccgaggttggaagcaaagtagaaaagtttaaagttggagacaaagttggtgtgggatacatggttg 13419688  T
Q  161 attcttgtcactcatgtcaaaattgtgttgataatcttgagaattactg 209  Q
    |||| ||||  ||||| |||||||||| |||  ||||||||||||||||    
T  13419687 attcatgtcgttcatgccaaaattgtgctgacgatcttgagaattactg 13419639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 88 - 218
Target Start/End: Complemental strand, 13413415 - 13413285
Alignment:
Q  88 atagttacagaagtgggaagcaaagtgaaaaagttcaaagttggagacagagtaggtgtgggatgcttggttgattcttgtcactcatgtcaaaattgtg 187  Q
    ||||| |||||||| |||||||||||| | ||||| ||||||||||||| ||||||||| || | |||| ||||||| ||||  ||||| ||| |||||     
T  13413415 atagtaacagaagtaggaagcaaagtggagaagtttaaagttggagacaaagtaggtgttggctacttgattgattcatgtcgatcatgccaagattgta 13413316  T
Q  188 ttgataatcttgagaattactgtccccaatt 218  Q
     ||| ||||||||||||||||| ||| ||||    
T  13413315 atgacaatcttgagaattactgccccaaatt 13413285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 94 - 216
Target Start/End: Complemental strand, 13426645 - 13426523
Alignment:
Q  94 acagaagtgggaagcaaagtgaaaaagttcaaagttggagacagagtaggtgtgggatgcttggttgattcttgtcactcatgtcaaaattgtgttgata 193  Q
    ||||| || |||||||||||  ||||||| ||||||||||||| |||||| ||||||| | |||||||||| ||||  |||||  |||||||||  ||      
T  13426645 acagaggttggaagcaaagtagaaaagtttaaagttggagacaaagtaggagtgggatacatggttgattcatgtcgttcatgcgaaaattgtgcggaag 13426546  T
Q  194 atcttgagaattactgtccccaa 216  Q
    |||||||||||||||| ||||||    
T  13426545 atcttgagaattactgcccccaa 13426523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 169
Target Start/End: Complemental strand, 13447310 - 13447230
Alignment:
Q  89 tagttacagaagtgggaagcaaagtgaaaaagttcaaagttggagacagagtaggtgtgggatgcttggttgattcttgtc 169  Q
    |||| ||||| |||||||||||||| |||||||| ||||||||||||| |||||| ||||||| | |||||||||| ||||    
T  13447310 tagtaacagaggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtc 13447230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 206
Target Start/End: Original strand, 13393379 - 13393512
Alignment:
Q  73 catgaaattgttggcatagttacagaagtgggaagcaaagtgaaaaagttcaaagttggagacagagtaggtgtgggatgcttggttgattcttgtcact 172  Q
    ||||| |||| ||| ||||| || || || |||||||||||  | ||||||||| ||||||||| ||| |||||||||||||| |||||||| ||||       
T  13393379 catgagattgctggtatagtgacggaggtaggaagcaaagtagagaagttcaaaattggagacaaagtgggtgtgggatgcttagttgattcgtgtcgtg 13393478  T
Q  173 catgtcaaaattgtgttgataatcttgagaatta 206  Q
    |||| ||||| ||||  || ||||||||||||||    
T  13393479 catgccaaaactgtgaggaaaatcttgagaatta 13393512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 103 - 206
Target Start/End: Complemental strand, 13373487 - 13373384
Alignment:
Q  103 ggaagcaaagtgaaaaagttcaaagttggagacagagtaggtgtgggatgcttggttgattcttgtcactcatgtcaaaattgtgttgataatcttgaga 202  Q
    |||||||  |||| ||||||||||||||||||||  |||||||| || ||| ||||||  || || ||||||||||||| ||||| |||| |||| ||||    
T  13373487 ggaagcatggtgacaaagttcaaagttggagacaaggtaggtgtagggtgcatggttggatcctgccactcatgtcaaagttgtggtgatgatctcgaga 13373388  T
Q  203 atta 206  Q
    ||||    
T  13373387 atta 13373384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 187
Target Start/End: Complemental strand, 13379292 - 13379199
Alignment:
Q  94 acagaagtgggaagcaaagtgaaaaagttcaaagttggagacagagtaggtgtgggatgcttggttgattcttgtcactcatgtcaaaattgtg 187  Q
    ||||| ||||||||||| ||||||||  ||||||||||||| || || |||||||| ||| ||||||  || || || |||||||||| |||||    
T  13379292 acagaggtgggaagcaaggtgaaaaacatcaaagttggagatagggttggtgtggggtgcatggttggatcctgccattcatgtcaaagttgtg 13379199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 47601601 - 47601524
Alignment:
Q  69 cagacatgaaattgttggcatagttacagaagtgggaagcaaagtgaaaaagttcaaagttggagacagagtaggtgt 146  Q
    ||||||||| |||||||| ||||| ||| ||||||||||||||||  ||||||||||||||||||||| ||| |||||    
T  47601601 cagacatgagattgttggtatagtgacaaaagtgggaagcaaagtagaaaagttcaaagttggagacaaagtgggtgt 47601524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University