View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1558_low_1 (Length: 792)
Name: NF1558_low_1
Description: NF1558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1558_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 287 - 776
Target Start/End: Complemental strand, 31693255 - 31692769
Alignment:
| Q |
287 |
ggttgtgaatcaaaatgccaaactttcttagacatgcaatgaagtctaagagaggaaaagagagagttcaaggcaaagnnnnnnncttgaacaaaatgag |
386 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
31693255 |
ggttgtgaatcaaaatgccaaactttcttaaacatgcaatgaagtctaagagaggaaaagagagagttcaaggcaaagaaaaaaacttgaacaaaatgag |
31693156 |
T |
|
| Q |
387 |
gaaaattagaattttgtatagtgatcctaatgctacagattattcaagtnnnnnnnnnnnnnnnnncatgtttttgagaaatgagtataagtttgatggt |
486 |
Q |
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| T |
31693155 |
gaaaattagaattttgtatagtgatcctaatgctacagattattcaagtgaagaagaagaaga---catgtttttgagaaatgagtataagtttgatggt |
31693059 |
T |
|
| Q |
487 |
tcaaagaggattgtggaggaattttttgttccatttatgcccttggctaatgagaataagaagaatgaatgtgaaagctcattgttagctttgaggaaaa |
586 |
Q |
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| T |
31693058 |
tcaaagaggattgtggaggaattttttgttccatttatgcccttggctaatgagaataagaagaatgaatgtgaaagctcattgttagctttgaggaaaa |
31692959 |
T |
|
| Q |
587 |
gggaagatgtcaaagaagtgatattaatgtcagtacttgatgtcagtgacacagatacaaaagctgcaaaagatattaatgacattgatggttcagttaa |
686 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31692958 |
gggaagatgtcaaagaagtgatattaatgtcagtacttgatgtcagtgacacagatacaaaagctgcaaaagatattaatgacattgatggttcagttaa |
31692859 |
T |
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| Q |
687 |
agaaattaatgtcaaagacttaacaagtgatgaaaaaagagaaaatctagttgaagaagttggtaaggaagatatttcagttcaatattt |
776 |
Q |
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| T |
31692858 |
agaaattaatgtcaaagacttaacaagtgatgaaaaaagagaaaatctagttgaagaagttggtaaggaagatatttcagttcaatattt |
31692769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 31693505 - 31693329
Alignment:
| Q |
1 |
tgcatacatgttttctaaggtttgaatgtgcttaatattttcttgttgagccttttgcatgcaactctatccacttgatcagagacacaaacggttgtgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31693505 |
tgcatacatgttttctaaggtttgaatgtgcttaatattttcttgttgagccttttgcatgcaactctatccacttgatcagagacacaaacgattgtgt |
31693406 |
T |
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| Q |
101 |
caaaccttatacatgagagttacatcaaattggtatgttgattcaccttgccatatcttaacaaaattcatacatag |
177 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
31693405 |
caaaccttatacatgagagttacatcaaattggtatgttgattcaccttgatatctcttaacaaaattcatacatag |
31693329 |
T |
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