View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1558_low_11 (Length: 224)
Name: NF1558_low_11
Description: NF1558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1558_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 207
Target Start/End: Original strand, 45981811 - 45981999
Alignment:
| Q |
19 |
aaatcaatagacttagacctctttgacaccagcagcagcagcaacagtttcattgaccttgttagcagcaacttccttaacagcaacaccacttgatttc |
118 |
Q |
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| T |
45981811 |
aaatcaatagacttagacctctttgacaccagcagcagcagcaacagtttcattgaccttgttagcagcaacttccttaacagcaacaccacttgatttc |
45981910 |
T |
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| Q |
119 |
tcttcttcaatttcaaaagcagaaacagggaaacttctaaaaagtccagaaggtgttttgaaagtgattttaccagttggtggatcatc |
207 |
Q |
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| T |
45981911 |
tcttcttcaatttcaaaagcagaaacagggaaacttctaaaaagtccagaaggtgttttgaaagtgattttaccagttggtggatcatc |
45981999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 119 - 207
Target Start/End: Original strand, 41716496 - 41716584
Alignment:
| Q |
119 |
tcttcttcaatttcaaaagcagaaacagggaaacttctaaaaagtccagaaggtgttttgaaagtgattttaccagttggtggatcatc |
207 |
Q |
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| T |
41716496 |
tcttcctcaacttcaaaagcagaaactggaaaagttctagaaagtccagaagtagctttgaaagtgattttaccagttggtggatcatc |
41716584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 207
Target Start/End: Complemental strand, 37614761 - 37614673
Alignment:
| Q |
119 |
tcttcttcaatttcaaaagcagaaacagggaaacttctaaaaagtccagaaggtgttttgaaagtgattttaccagttggtggatcatc |
207 |
Q |
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| T |
37614761 |
tcttcttctatctcaaaagctgaggcagggaaagttctgaaaagtccagtaatggccctgaaagtgattttaccagttggtggatcatc |
37614673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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