View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1558_low_2 (Length: 383)
Name: NF1558_low_2
Description: NF1558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1558_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 19 - 375
Target Start/End: Original strand, 42530048 - 42530418
Alignment:
| Q |
19 |
atgcacacttcaacttaaaccacaattacataacaagtgatcagaacctgatcatttcttactgcagggatgactctgaagatcaatcgaagaaaaccaa |
118 |
Q |
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| T |
42530048 |
atgcacacttcaacttaaaccacaattacataacaagtgatcagaacctgatcatttcttactgcagggatgactctgaagatcaatcgaaggaaaccaa |
42530147 |
T |
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| Q |
119 |
tgcggtaggttccatcaatgtgcgcagcatcttgtcggggaaatgtgtggcgaaaattaatgctgcaaaagctttggagtgcattgattcatctcaaata |
218 |
Q |
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| T |
42530148 |
tgcggtaggttccatcaatgtgagcagcatcttgtcggggaaatgtgtggcgaaaattaatgctgcaaaagctttggagtgcattgattcatctcaaata |
42530247 |
T |
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| Q |
219 |
atgtcagtt------ccagaggctttggagggtatagcaatcctcta--------ttatgatgaagaccggaacacgatttatacgggtgacagacatgg |
304 |
Q |
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| T |
42530248 |
atgtcagttccagtcccagaggctttggagggtataaccaccctctattatgaatttatgatgaagaccggaacgcgatttatacgggtaacagacatgg |
42530347 |
T |
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| Q |
305 |
tcttgttcatgtctggtccaactccaaccaactgatgataaaaaaggagtaggttttattgtttcatctca |
375 |
Q |
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| T |
42530348 |
tcttgttcatgtctggtccaactccaaccaactgatgataaaaaaggaataggttttattgtttcttctca |
42530418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 35 - 375
Target Start/End: Original strand, 42535780 - 42536120
Alignment:
| Q |
35 |
aaaccacaattacataacaagtgatcagaacctgatcatttcttactgcagggatgactctgaagatcaatcgaagaaaaccaatgcggtaggttccatc |
134 |
Q |
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| T |
42535780 |
aaacaacaattacataacaagtgatcagaacctgatcatttcttactgcagggatgactctgaagatcaatcgatggttaccaatgtgataggttccatc |
42535879 |
T |
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| Q |
135 |
aatgtgcgcagcatcttgtcggggaaatgtgtggcgaaaattaatgctgcaaaagctttggagtgcattgattcatctcaaataatgtcagttccagagg |
234 |
Q |
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| T |
42535880 |
aatgtgagcaacatcttatcggggaaatgtgtggcgaaaattaatgctacaaaagctttggagtgcattgattcatctaaaaaaatgtcagttacagagg |
42535979 |
T |
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| Q |
235 |
ctttggagggtatagcaatcctctattatgatgaagaccggaacacgatttatacgggtgacagacatggtcttgttcatgtctggtccaactccaacca |
334 |
Q |
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| T |
42535980 |
ctttggagggtataaccaccctctattatgatgaagaccggaacgcgatttatacgggtaacagacatggtcatgttcatgtctggtccaactccaacca |
42536079 |
T |
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| Q |
335 |
actgatgataaaaaaggagtaggttttattgtttcatctca |
375 |
Q |
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| T |
42536080 |
actaatgataaaaaaggaataggttttattgtttcttctca |
42536120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 126 - 187
Target Start/End: Original strand, 27826012 - 27826073
Alignment:
| Q |
126 |
ggttccatcaatgtgcgcagcatcttgtcggggaaatgtgtggcgaaaattaatgctgcaaa |
187 |
Q |
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| T |
27826012 |
ggttccatcaatgtgagcaacatcttgacagggaaatgtgtggcgaaaattaatgctgcaaa |
27826073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 327
Target Start/End: Original strand, 27826179 - 27826252
Alignment:
| Q |
254 |
cctctattatgatgaagaccggaacacgatttatacgggtgacagacatggtcttgttcatgtctggtccaact |
327 |
Q |
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| T |
27826179 |
cctcttttatgatgaagaccggaacgagatctatactggtaatagacatggttttgttcatgtatggtccaact |
27826252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 105
Target Start/End: Original strand, 27825797 - 27825857
Alignment:
| Q |
45 |
tacataacaagtgatcagaacctgatcatttcttactgcagggatgactctgaagatcaat |
105 |
Q |
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| T |
27825797 |
tacataacaagtgatcaggacctgattatatcgtactgcaaagctgaatctgaagatcaat |
27825857 |
T |
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