View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1558_low_3 (Length: 368)
Name: NF1558_low_3
Description: NF1558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1558_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 14 - 360
Target Start/End: Original strand, 51676573 - 51676919
Alignment:
| Q |
14 |
gtatctaattaccacatgtatgcatgcatgtatcataagctttactttgttaaatacttcgagtaactagtagtaagtagaggaccaaatgaacaaatta |
113 |
Q |
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| T |
51676573 |
gtatctaattaccacatgtatgcatgcatgtatcataagctttactttgttaaatacttcgagtaactagtagtaagtagaggaccaaatgaacaaatta |
51676672 |
T |
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| Q |
114 |
cccatttatgtaatgtaatatattccaatgcccgtgagtttctttacttggaaaatataaggcatacatggcgtgtccaaatagagctgaacattatttt |
213 |
Q |
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| T |
51676673 |
cccatttatgtaatgtaatatattccaatgcccgtgagttgctttacttggaaaatataaggcatacatggcgtgtccaaatagagctgaacattatttt |
51676772 |
T |
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| Q |
214 |
tccccccgctcaagaaggatacatacacacacaaagattaaaaatgaaaagtgtggtaaattaattaatcaatgaagtgttgataaagttcctttggttt |
313 |
Q |
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| T |
51676773 |
ttcccccgctcaagaaggatacatacacacacaaagattaaaaatgaaaagtgtggtaaattaattattcaatgaagtgttgataaagttcctttggttt |
51676872 |
T |
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| Q |
314 |
ttctcttgtcttttgttatttgcatgtcgtaatagtttgctctgtgc |
360 |
Q |
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| T |
51676873 |
ttctcttgtcttttgttatttgcatgtcgtaatagtttgctctgtgc |
51676919 |
T |
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