View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1558_low_8 (Length: 237)
Name: NF1558_low_8
Description: NF1558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1558_low_8 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 8 - 237
Target Start/End: Original strand, 30406930 - 30407159
Alignment:
| Q |
8 |
ggacatcatcaacccacctaccaaaataaaggtactcgaccccccgctaggccatatctagcagccaagagtctaaaccaaagaccctttgtctgccacc |
107 |
Q |
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| T |
30406930 |
ggacatcatcaacccacctaccaaaataaaggtactcgatcccccactaggccatatctagcagccaagagtctaaaccaaagacccttcgtctgccacc |
30407029 |
T |
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| Q |
108 |
tacctccaataccatttatccaaccatattaaactccctcattctccttgcccctaaaccgtcaatctccttgtccaaacagatatgactttaactacat |
207 |
Q |
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| T |
30407030 |
tacctccaataccatttatccaaccatattaaactccctcattctccttgcccctaaaccgccaatctccttatccaaacagatatgactttaactacat |
30407129 |
T |
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| Q |
208 |
cacataaacaacctccttcaacttaatgtt |
237 |
Q |
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| T |
30407130 |
cacataaacaacctccttcaacttaatgtt |
30407159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 191
Target Start/End: Original strand, 25132768 - 25132828
Alignment:
| Q |
131 |
ccatattaaactccctcattctccttgcccctaaaccgtcaatctccttgtccaaacagat |
191 |
Q |
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| T |
25132768 |
ccatattaaactctctaattctccttagccccaaaccaccaacctccttgtccaaacagat |
25132828 |
T |
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