View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1558_low_9 (Length: 237)
Name: NF1558_low_9
Description: NF1558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1558_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 33462496 - 33462716
Alignment:
| Q |
1 |
tacatacaaatactgtattccaaaacaatttccattggaaacatcggctatattttcaattatattttgaagtagttgctaagacttaggactctttcaa |
100 |
Q |
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| T |
33462496 |
tacatacaaatactgtattccaaaacaatttccattggaaacatcggctatattttcaattatattttgaagtggttgctaagacttaggactctttcaa |
33462595 |
T |
|
| Q |
101 |
ttcaaacattggaatgccaagtggattttatatcataatcttttatctttttgctttaggaatatcaaatgccgtctgattaatcacgacttaattacta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33462596 |
ttcaaacattggaatgccaagtggattttatatcataatcgtttatctttttgctttaggaatatcaaatgccgtctgattaatcacgacttaattacta |
33462695 |
T |
|
| Q |
201 |
attaattgcttttggccgtct |
221 |
Q |
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||||||||||||| ||||||| |
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| T |
33462696 |
attaattgcttttcgccgtct |
33462716 |
T |
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