View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1559-INSERTION-2 (Length: 311)
Name: NF1559-INSERTION-2
Description: NF1559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1559-INSERTION-2 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 7 - 310
Target Start/End: Complemental strand, 41336188 - 41335886
Alignment:
| Q |
7 |
agttacaacagaggatgatggaaaattcgaccacagaaattactagaaaaattgaattagtaacnnnnnnnttagaaaggaaaaatacatgaaattcacc |
106 |
Q |
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| T |
41336188 |
agttacaacagag-atgatggaaaattcgaccacagatattactagaaaaattgaattagtaacaaaaaaattagaaagaaaaaatacatgaaattcacc |
41336090 |
T |
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| Q |
107 |
tctaatttcatctctaagtataagttagaggtgtaaaaattagagatcaatttaaatannnnnnnncatctctaattactgccaataattcaactttttc |
206 |
Q |
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| T |
41336089 |
tctaatttcatctctaagtataagttagaggtgtaaaaattagagatcaatttaaatattttttttcatctctaattactgccaataattcaactttttc |
41335990 |
T |
|
| Q |
207 |
tagcagtgcaaatgatgaaagttataacagacgactagccgaagaagatgcaagaccatgaaaatcattccatgaattattgtaatggttgttattctct |
306 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41335989 |
tagcagtgcaaacgatgaaagttataacagacgactagccgaagaagatgcaagaccatgaaaatcattccatgaattattgtaatggttgttattctct |
41335890 |
T |
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| Q |
307 |
gaca |
310 |
Q |
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|||| |
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| T |
41335889 |
gaca |
41335886 |
T |
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