View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1559-INSERTION-4 (Length: 637)
Name: NF1559-INSERTION-4
Description: NF1559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1559-INSERTION-4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 8 - 397
Target Start/End: Original strand, 16305637 - 16306026
Alignment:
| Q |
8 |
gtacaagaagtgttgcgattctgtttaccatccaaacgaccaaatgaaacttgatatcgaattgaacacatggttacatggtatctaatgattatagagc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16305637 |
gtacaagaagtgttgcgattctgtttaccatccaaacgaccaaatgaaacttgatatcgaattgaacacatggttacatggtatctaatgattatagagc |
16305736 |
T |
|
| Q |
108 |
taatatttctccctcaacaacaggtaaaatcattgtagcaaatatctcaataggtcaaccccctatcccacaattactcatcgcagacaccgctagtaac |
207 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
16305737 |
taatatttctccctcaacaacaggtaaaaccattgtagcaaatatctcaataggtcaaccccctatcccacaatcactcatcgcagacaccggtagtaac |
16305836 |
T |
|
| Q |
208 |
aaggtcatattttcgatccttaaaagtcgccaacctattcaccatcatgcaagtaaccctgttagttcaacgactgtgtgaatgtggcctcaccgatcgg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
16305837 |
aaggtcatattttcgatccttaaaagtcgccaacctattcaccatcatgcaaataaccctgttagttcaacgactgtgtgaatgcggcctcaccgatcgg |
16305936 |
T |
|
| Q |
308 |
ctgacaattgacatacaacaccacttatgtagacaattcatcctcatcaggaacacttggcatggacatgctggtctttgagacatgtga |
397 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
16305937 |
ctgacaattgacatacaacaccacttacgcagacaattcatcctcatcaggaacacttggcttggacatgctggtctttgagacatgtga |
16306026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 471 - 637
Target Start/End: Original strand, 16306067 - 16306233
Alignment:
| Q |
471 |
tacaatggaatactagggttaggactaaacaggtaaaaaatgttcttactgcataggtagcttaactgacaagtcaaaaatttcaacaaatgggggatca |
570 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16306067 |
tacaatggaatactagggttaggactaaacaggtaaaaaatgttcttactgcataggtagcttaactgacaagtcaaaaatttcaacaaatgggggatca |
16306166 |
T |
|
| Q |
571 |
tttgttttgtataagtgtagatctaatcagtgatattggtattgatctttctattattgggttatta |
637 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16306167 |
tttgttttgtataagtgtagatccaatcagtgatattggtattgatctttctattattgggttatta |
16306233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 484 - 519
Target Start/End: Original strand, 16306033 - 16306069
Alignment:
| Q |
484 |
tagggttaggactaaacaggt-aaaaaatgttcttac |
519 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
16306033 |
tagggttaggactaaacaggtaaaaaaatgttcttac |
16306069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University