View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1559-INSERTION-5 (Length: 187)

Name: NF1559-INSERTION-5
Description: NF1559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1559-INSERTION-5
NF1559-INSERTION-5
[»] chr8 (3 HSPs)
chr8 (12-146)||(40381895-40382027)
chr8 (120-161)||(42163798-42163839)
chr8 (110-172)||(14539315-14539377)
[»] chr5 (1 HSPs)
chr5 (116-161)||(4930888-4930933)
[»] chr2 (1 HSPs)
chr2 (122-158)||(14200230-14200266)
[»] chr1 (2 HSPs)
chr1 (125-171)||(21487243-21487289)
chr1 (129-174)||(42773484-42773529)


Alignment Details
Target: chr8 (Bit Score: 70; Significance: 8e-32; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 8e-32
Query Start/End: Original strand, 12 - 146
Target Start/End: Complemental strand, 40382027 - 40381895
Alignment:
Q  12 tttctttttaattagttg-tatcatctcatcacctcgattagatattctggtttattattttcttttgnnnnnnnnnnnnnnnatcggttcacatcctta 110  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||               |||||||||||||||||    
T  40382027 tttctttttaattagttgctattatctcatcacctcgattagatattctggtttattattttcttttg---ttttttttttttatcggttcacatcctta 40381931  T
Q  111 atcaaggacaaatgtatgttgttggatgtgtgggca 146  Q
    ||||||||||||||||||||||||||||||| ||||    
T  40381930 atcaaggacaaatgtatgttgttggatgtgtaggca 40381895  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 42163798 - 42163839
Alignment:
Q  120 aaatgtatgttgttggatgtgtgggcatgtgcctacacaaaa 161  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  42163798 aaatgtatgttgttggatgtgtgggcatgtgcctacacaaaa 42163839  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 172
Target Start/End: Original strand, 14539315 - 14539377
Alignment:
Q  110 aatcaaggacaaatgtatgttgttggatgtgtgggcatgtgcctacacaaaattgttaaaaac 172  Q
    ||||| ||||||||| |||||| |  |||||||||| ||||||||||||||||| ||| ||||    
T  14539315 aatcagggacaaatgcatgttgctttatgtgtgggcttgtgcctacacaaaatttttagaaac 14539377  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 161
Target Start/End: Complemental strand, 4930933 - 4930888
Alignment:
Q  116 ggacaaatgtatgttgttggatgtgtgggcatgtgcctacacaaaa 161  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||    
T  4930933 ggacgaatgtatgttgttggatgtgtgggcatgtgcctccacaaaa 4930888  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 14200230 - 14200266
Alignment:
Q  122 atgtatgttgttggatgtgtgggcatgtgcctacaca 158  Q
    |||||||||||||||||||||||||||||||||||||    
T  14200230 atgtatgttgttggatgtgtgggcatgtgcctacaca 14200266  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 171
Target Start/End: Original strand, 21487243 - 21487289
Alignment:
Q  125 tatgttgttggatgtgtgggcatgtgcctacacaaaattgttaaaaa 171  Q
    ||||| ||| ||||||||||||||||||||||||||| | |||||||    
T  21487243 tatgtggtttgatgtgtgggcatgtgcctacacaaaaatcttaaaaa 21487289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 129 - 174
Target Start/End: Complemental strand, 42773529 - 42773484
Alignment:
Q  129 ttgttggatgtgtgggcatgtgcctacacaaaattgttaaaaacct 174  Q
    |||||||||||||||||||||||| |||||||| | ||| ||||||    
T  42773529 ttgttggatgtgtgggcatgtgccgacacaaaaattttagaaacct 42773484  T

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