View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15590_high_1 (Length: 308)
Name: NF15590_high_1
Description: NF15590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15590_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 168; Significance: 5e-90; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 8 - 249
Target Start/End: Complemental strand, 42495872 - 42495632
Alignment:
| Q |
8 |
ccaagaaaatagtaaactgagggccaaaactaaagatgaagcgatcannnnnnnaggattgtatatatcttaaagaaatcaaagttgataacaactttga |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42495872 |
ccaaaaaaatagtaaactgagggccaaaactaaagatgaagcgatcgtttttttaggattgtatatatcttaaagaaatcaaagttgataacaactttga |
42495773 |
T |
|
| Q |
108 |
atatcatttccttnnnnnnntaattgaatatcattgtctatgggcctgtttgagaccatggatggagttatgaaacttacagattgtagttaaacatgga |
207 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42495772 |
atatcatttccttaaaaaaa-aattgaatatcattgtatatgggcctgtttgagaccatagatggagttatgaaacttacagattgtagttaaacatgga |
42495674 |
T |
|
| Q |
208 |
acagaaccaagaattttgataccatatagatttattctttga |
249 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
42495673 |
acagaaccaagaatcttgataccatatagatttattttttga |
42495632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 64 - 296
Target Start/End: Complemental strand, 42493629 - 42493381
Alignment:
| Q |
64 |
gattgtatatatcttaaagaaatcaaagttgataacaactttgaatatcatttccttnnnnnnntaattgaatatcattgtctatgggcctgtttgagac |
163 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
42493629 |
gattgtttatatcctaaagaaatcaaagttgataacaactttcaatatcatttccttcaaaaaact-ttgaatatcattgtctatgggcatgtttgagac |
42493531 |
T |
|
| Q |
164 |
catggatggagttatgaaacttacagattgtagttaaacatggaacagaaccaagaattttga-----------------taccatatagatttattctt |
246 |
Q |
| |
|
||| ||||||||||||||| ||||||| || | |||||||||||| ||||||||||| |||| |||||| ||||||||||| | |
|
|
| T |
42493530 |
catagatggagttatgaaatttacagactgcaattaaacatggaatagaaccaagaacgttgacaccagataaagagcagtaccatttagatttattcat |
42493431 |
T |
|
| Q |
247 |
tgaggtctccaagtaagaagagcactattgacatcaagtagcctttgatg |
296 |
Q |
| |
|
|| |||||||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
42493430 |
cgacgtctccaagtaaaaagagcattattgacatcaagtagcctttgatg |
42493381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 224 - 296
Target Start/End: Complemental strand, 42495628 - 42495556
Alignment:
| Q |
224 |
tgataccatatagatttattctttgaggtctccaagtaagaagagcactattgacatcaagtagcctttgatg |
296 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
42495628 |
tgataccatatagatttattcattggggtctccaagtaaaaagagcactattgacatcaagtagcctttgatg |
42495556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University