View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15590_high_3 (Length: 235)
Name: NF15590_high_3
Description: NF15590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15590_high_3 |
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| [»] scaffold0224 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 44662637 - 44662424
Alignment:
| Q |
1 |
tcactatgctcagactataaccatgtacaacatgcgtaacttaggtaggcttttggtgcttcatatttttctatctttagatactattttataccaaaaa |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44662637 |
tcactatgctcagactataaccaagtacaacatgcgtaacttaggtaggcttttggtgcttcatatttttctatctttagatactattttataccaaaaa |
44662538 |
T |
|
| Q |
101 |
ataccttgtagacaattaattcaatctcttattgattgacatttataga-tgacttatcggattttgagtggtggtcgaatctgatcgtttgaagcatcg |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44662537 |
ataccttgtagacaattaattcaatctcttattgattgacatttatagaccgacttatcggattttgagtggtggtcgaatctgatcgtttgaagcatcg |
44662438 |
T |
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| Q |
200 |
taccttcgccggct |
213 |
Q |
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|||||||| ||||| |
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| T |
44662437 |
taccttcgtcggct |
44662424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 44685040 - 44684974
Alignment:
| Q |
12 |
agactataaccatgtacaacatgcgtaacttaggtaggcttttggtgcttcatatttttctatctttag |
80 |
Q |
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||||||||| || ||||||| | ||||||||||||||| |||||||||||| |||||||||| ||||| |
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| T |
44685040 |
agactataaacaagtacaacttacgtaacttaggtagggttttggtgcttc--atttttctatatttag |
44684974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 195
Target Start/End: Complemental strand, 42919751 - 42919709
Alignment:
| Q |
153 |
cttatcggattttgagtggtggtcgaatctgatcgtttgaagc |
195 |
Q |
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| T |
42919751 |
cttatcggatgttgagtggtgggcgactctgatcgtttgaagc |
42919709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 1918454 - 1918498
Alignment:
| Q |
150 |
tgacttatcggattttgagtggtggtcgaatctgatcgtttgaag |
194 |
Q |
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| T |
1918454 |
tgacatatcggatgttgagtggtggtcgaatctgatcgtttgaag |
1918498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0224 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 195
Target Start/End: Original strand, 18580 - 18622
Alignment:
| Q |
153 |
cttatcggattttgagtggtggtcgaatctgatcgtttgaagc |
195 |
Q |
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| T |
18580 |
cttatcggatgttgagtggtgggcgactctgatcgtttgaagc |
18622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 196
Target Start/End: Original strand, 23264820 - 23264849
Alignment:
| Q |
167 |
agtggtggtcgaatctgatcgtttgaagca |
196 |
Q |
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| T |
23264820 |
agtggtggtcgaatctgatcgtttgaagca |
23264849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 36796715 - 36796747
Alignment:
| Q |
164 |
ttgagtggtggtcgaatctgatcgtttgaagca |
196 |
Q |
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|||||||||||||| |||||||||||||||||| |
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| T |
36796715 |
ttgagtggtggtcgcatctgatcgtttgaagca |
36796747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 196
Target Start/End: Original strand, 1799254 - 1799287
Alignment:
| Q |
163 |
tttgagtggtggtcgaatctgatcgtttgaagca |
196 |
Q |
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||||||||||||||||| |||||||||||||||| |
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| T |
1799254 |
tttgagtggtggtcgaagctgatcgtttgaagca |
1799287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 29339679 - 29339748
Alignment:
| Q |
12 |
agactataaccatgtacaacatgcgtaacttaggtaggcttttggtgcttcatatttttctatctttagata |
83 |
Q |
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||||||||| || ||||||| |||| ||||||||| || ||||| ||||| || ||||||||||||||||| |
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| T |
29339679 |
agactataaacaagtacaacttgcgcaacttaggtgggtttttgatgcttgat--ttttctatctttagata |
29339748 |
T |
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