View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15590_low_2 (Length: 548)
Name: NF15590_low_2
Description: NF15590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15590_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 507; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 15 - 529
Target Start/End: Original strand, 43014997 - 43015511
Alignment:
| Q |
15 |
caaaggcatatacaacaggaacacgaaagaggagaaagattcaaaccgaagagtgtgacttacaaggaagtacaggaggagaaacaagatggcacaaaac |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43014997 |
caaaggcatatacaacaggaacacgaaagaggagaaagattcaaaccgaagagtgtgacttacaaggaagtacaggaggagaaacaagatggcacaaaac |
43015096 |
T |
|
| Q |
115 |
tggtaagaccagacctgttatggttaatggtaaacaaaaaggttgcaagaaaattcttgttctctacaccaactttggaaagaatcgaaaacccgagaag |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
43015097 |
tggtaagaccagacctgttatggttaatggtaaacaaaaaggttgcaagaaaattcttgttctctacaccaacttcggaaagaatcgaaaacccgagaag |
43015196 |
T |
|
| Q |
215 |
acgaattgggtgatgcatcaataccatcttggacaacatgaagaagagaaagaaggagagcttgttgtttcaaagatattttatcagacacagccaagac |
314 |
Q |
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| T |
43015197 |
acgaattgggtgatgcatcaataccatcttggacaacatgaagaagagaaagaaggagagcttgttgtttcaaagatattttatcagacacagccaagac |
43015296 |
T |
|
| Q |
315 |
agtgtaattggtctgataataatcaaagaataattagtgcaacaacaacaaccggtgaaggaagtggtggagaacctaattataatatcaatggaagaag |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43015297 |
agtgtaattggtctgataataatcaaagaataattagtgcaacaacaacaactggtgaaggaagtggtggagaacctaattataatatcaatggaagaag |
43015396 |
T |
|
| Q |
415 |
agatagtggaagtggaagttcttcttctaaggaaattgttactcagattcatagagatgaaatgtctgctgttgttggtgtccctagtcctttaacaagc |
514 |
Q |
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| T |
43015397 |
agatagtggaagtggaagttcttcttctaaggaaattgttactcagattcatagagatgaaatgtctgctgttgttggtgtccctagtcctttaacaagc |
43015496 |
T |
|
| Q |
515 |
ttcacaaatgctttg |
529 |
Q |
| |
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||||||||||||||| |
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| T |
43015497 |
ttcacaaatgctttg |
43015511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 95 - 290
Target Start/End: Complemental strand, 28948919 - 28948724
Alignment:
| Q |
95 |
gaaacaagatggcacaaaactggtaagaccagacctgttatggttaatggtaaacaaaaaggttgcaagaaaattcttgttctctacaccaactttggaa |
194 |
Q |
| |
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| T |
28948919 |
gaaacaagatggcacaaaacagggaaaactagaccagttattattgatggtgttatgaaaggtttcaagaagatactagtcctctacaccaactatggaa |
28948820 |
T |
|
| Q |
195 |
agaatcgaaaacccgagaagacgaattgggtgatgcatcaataccatcttggacaacatgaagaagagaaagaaggagagcttgttgtttcaaaga |
290 |
Q |
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| | || || |||||||| ||||||||||||||||||||||| ||||| |||||||||||||||| || || | ||||||||||||| |
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| T |
28948819 |
ggcaaaagaagcctgagaagaccaattgggtgatgcatcaataccaccttggtagtaatgaagaagagaaagatggtgaattagttgtttcaaaga |
28948724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 176 - 315
Target Start/End: Original strand, 4235754 - 4235893
Alignment:
| Q |
176 |
ctctacaccaact-ttggaaagaatcgaaaacccgagaagacgaattgggtgatgcatcaataccatcttggacaacatgaagaagagaaagaaggagag |
274 |
Q |
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||||||||||||| ||| ||||| | ||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||| | ||| ||||| |
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| T |
4235754 |
ctctacaccaactattgcaaaga-tggaaaaccagagaagactaattgggtgatgcatcaataccatcttggtatgaatgaagaagaaagagatggagaa |
4235852 |
T |
|
| Q |
275 |
cttgttgtttcaaagatattttatcagacacagccaagaca |
315 |
Q |
| |
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| |||| ||||||||| || || ||||||||||| ||||| |
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| T |
4235853 |
ttcgttgcttcaaagatcttctaccagacacagcctagaca |
4235893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 161 - 270
Target Start/End: Original strand, 38887028 - 38887137
Alignment:
| Q |
161 |
aagaaaattcttgttctctacaccaactttggaaagaatcgaaaacccgagaagacgaattgggtgatgcatcaataccatcttggacaacatgaagaag |
260 |
Q |
| |
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|||||||||||||| || ||||| |||| ||||| | |||| || ||||| || |||||||| ||||| ||||||||||||||| | ||||||| | |
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| T |
38887028 |
aagaaaattcttgtgctttacactaactacagaaagcaaagaaagccagagaaaacaaattgggttatgcaccaataccatcttggaaacaatgaagagg |
38887127 |
T |
|
| Q |
261 |
agaaagaagg |
270 |
Q |
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|||||||||| |
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| T |
38887128 |
agaaagaagg |
38887137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 151 - 272
Target Start/End: Original strand, 30505860 - 30505981
Alignment:
| Q |
151 |
aaaaggttgcaagaaaattcttgttctctacaccaactttggaaagaatcgaaaacccgagaagacgaattgggtgatgcatcaataccatcttggacaa |
250 |
Q |
| |
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|||||||| ||| ||||||||||| || ||||| |||| |||||| | |||| || ||||| || ||||||||||||||||| || |||||||| |
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| T |
30505860 |
aaaaggttacaaaaaaattcttgtactttacacaaactatggaaaacaaagaaagccagagaaaacaaattgggtgatgcatcagtatcatcttgggagt |
30505959 |
T |
|
| Q |
251 |
catgaagaagagaaagaaggag |
272 |
Q |
| |
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| T |
30505960 |
gatgaagaagagaaagaaggag |
30505981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 152 - 306
Target Start/End: Complemental strand, 34830007 - 34829853
Alignment:
| Q |
152 |
aaaggttgcaagaaaattcttgttctctacaccaactttggaaagaatcgaaaacccgagaagacgaattgggtgatgcatcaataccatcttggacaac |
251 |
Q |
| |
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||||||| |||||| || || || ||||||||||||| ||||| | | || || |||||||| ||||||||||||||||||||||| ||||| |
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| T |
34830007 |
aaaggtttcaagaagatactagtcctctacaccaactatggaaggcaaaagaagcctgagaagaccaattgggtgatgcatcaataccaccttggtagta |
34829908 |
T |
|
| Q |
252 |
atgaagaagagaaagaaggagagcttgttgtttcaaagatattttatcagacaca |
306 |
Q |
| |
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|||||||||||||||| || || | |||||||||||| | ||||| || ||||| |
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| T |
34829907 |
atgaagaagagaaagatggtgaattagttgtttcaaaggtgttttaccaaacaca |
34829853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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