View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15590_low_4 (Length: 278)

Name: NF15590_low_4
Description: NF15590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15590_low_4
NF15590_low_4
[»] chr4 (15 HSPs)
chr4 (1-254)||(3254059-3254309)
chr4 (73-186)||(28497486-28497600)
chr4 (79-173)||(35555831-35555927)
chr4 (73-179)||(54470203-54470311)
chr4 (91-148)||(47611741-47611799)
chr4 (81-161)||(29398822-29398903)
chr4 (73-175)||(17900476-17900580)
chr4 (83-154)||(42639224-42639296)
chr4 (73-154)||(51252665-51252747)
chr4 (79-135)||(31459032-31459089)
chr4 (73-161)||(41192832-41192921)
chr4 (79-135)||(55768724-55768781)
chr4 (79-135)||(55832980-55833037)
chr4 (90-161)||(42285897-42285969)
chr4 (84-135)||(49987435-49987487)
[»] chr1 (16 HSPs)
chr1 (73-192)||(2544595-2544716)
chr1 (46-186)||(35828721-35828863)
chr1 (73-147)||(27848016-27848091)
chr1 (73-162)||(43423715-43423805)
chr1 (80-186)||(36339974-36340082)
chr1 (79-162)||(48431602-48431686)
chr1 (115-193)||(10569231-10569310)
chr1 (48-162)||(19908235-19908350)
chr1 (73-154)||(1661426-1661508)
chr1 (73-126)||(52561843-52561897)
chr1 (74-154)||(8343062-8343143)
chr1 (42-146)||(9509283-9509388)
chr1 (79-147)||(32404737-32404806)
chr1 (80-147)||(5338727-5338795)
chr1 (79-146)||(15085936-15086004)
chr1 (80-186)||(40416374-40416482)
[»] chr2 (17 HSPs)
chr2 (73-186)||(43752118-43752233)
chr2 (90-147)||(9578914-9578972)
chr2 (79-179)||(23714439-23714541)
chr2 (79-179)||(24102111-24102213)
chr2 (115-186)||(3481180-3481252)
chr2 (73-128)||(18958903-18958959)
chr2 (79-146)||(45367837-45367905)
chr2 (79-153)||(8180782-8180857)
chr2 (73-194)||(12141540-12141663)
chr2 (79-153)||(25834683-25834758)
chr2 (113-179)||(42543272-42543339)
chr2 (46-102)||(11017285-11017339)
chr2 (79-135)||(19024182-19024239)
chr2 (73-136)||(6218963-6219027)
chr2 (42-145)||(9556582-9556685)
chr2 (79-146)||(11992320-11992388)
chr2 (73-136)||(41330125-41330189)
[»] chr6 (6 HSPs)
chr6 (73-186)||(14389339-14389453)
chr6 (73-244)||(9593821-9593992)
chr6 (79-147)||(608159-608228)
chr6 (47-147)||(33084028-33084129)
chr6 (79-146)||(5258360-5258428)
chr6 (85-182)||(24665818-24665918)
[»] chr5 (16 HSPs)
chr5 (73-185)||(79509-79623)
chr5 (73-157)||(33667212-33667297)
chr5 (69-146)||(31636132-31636210)
chr5 (42-158)||(6888958-6889075)
chr5 (73-128)||(14667759-14667815)
chr5 (79-127)||(27895-27944)
chr5 (42-162)||(6859346-6859467)
chr5 (46-154)||(14749276-14749385)
chr5 (89-175)||(42199298-42199386)
chr5 (47-113)||(37124539-37124603)
chr5 (73-193)||(2712940-2713062)
chr5 (79-147)||(28676597-28676666)
chr5 (79-146)||(14665716-14665784)
chr5 (79-134)||(15168794-15168850)
chr5 (79-146)||(16347590-16347658)
chr5 (79-146)||(38684969-38685037)
[»] chr3 (14 HSPs)
chr3 (46-136)||(54365199-54365287)
chr3 (73-178)||(36820140-36820247)
chr3 (73-150)||(50960841-50960919)
chr3 (73-136)||(26490311-26490375)
chr3 (81-186)||(42510187-42510292)
chr3 (73-132)||(44134056-44134116)
chr3 (69-136)||(27917562-27917630)
chr3 (79-146)||(49503766-49503834)
chr3 (46-160)||(39600879-39600994)
chr3 (74-136)||(54128375-54128438)
chr3 (74-161)||(2340911-2340999)
chr3 (90-145)||(21200561-21200617)
chr3 (73-175)||(34719254-34719358)
chr3 (79-146)||(47233808-47233876)
[»] chr8 (15 HSPs)
chr8 (79-186)||(36143367-36143476)
chr8 (48-128)||(45512725-45512808)
chr8 (46-154)||(44681243-44681352)
chr8 (80-194)||(43904828-43904947)
chr8 (46-178)||(44373745-44373879)
chr8 (79-136)||(18752098-18752155)
chr8 (42-127)||(33511325-33511407)
chr8 (73-136)||(41444548-41444612)
chr8 (46-128)||(13171879-13171962)
chr8 (91-145)||(41971991-41972046)
chr8 (79-136)||(45419239-45419297)
chr8 (42-186)||(10824335-10824477)
chr8 (47-162)||(32043560-32043676)
chr8 (90-145)||(35643814-35643870)
chr8 (116-183)||(39953438-39953506)
[»] chr7 (15 HSPs)
chr7 (73-179)||(48736077-48736185)
chr7 (73-175)||(36514389-36514493)
chr7 (79-159)||(36101964-36102045)
chr7 (73-136)||(7189448-7189512)
chr7 (79-162)||(42187472-42187556)
chr7 (79-136)||(26742118-26742176)
chr7 (79-136)||(40169651-40169709)
chr7 (73-134)||(47848670-47848732)
chr7 (114-159)||(16013326-16013371)
chr7 (80-182)||(12966025-12966129)
chr7 (73-136)||(27893770-27893834)
chr7 (73-136)||(38920790-38920854)
chr7 (79-146)||(43281676-43281744)
chr7 (79-146)||(45836692-45836760)
chr7 (90-125)||(47236238-47236274)
[»] scaffold0018 (1 HSPs)
scaffold0018 (73-147)||(44079-44154)


Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 3254059 - 3254309
Alignment:
Q  1 cgagaatgttaggttcttttgtcgtaagaatatatgagatcatatgattagaaatgaaaatattaataagaaagttgtggtagcacctttagtagaaaag 100  Q
    ||||||||||||||||||||||||||||||| ||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3254059 cgagaatgttaggttcttttgtcgtaagaatgtatgagat---atgattagaaatgaaaatattaataagaaagttgtggtagcacctttagtagaaaag 3254155  T
Q  101 atgatggaaaataacttaggtggtttggacatgtagtgtgaagacctatggattatgtagtaggagggtagatcaaatgaaggataatcaaattcttcaa 200  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3254156 atgatggaaaatagcttaggtggtttggacatatagtgtgaagacctatgaattatgtagtaggagggtagatcaaatgaaggataatcagattcttcaa 3254255  T
Q  201 gatagatgaagaactagaaattttttaagagaaactattaggaatcactaagag 254  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  3254256 gatagatgaagaactagaaaaattttaagagaaactattaggaatcactaagag 3254309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 73 - 186
Target Start/End: Original strand, 28497486 - 28497600
Alignment:
Q  73 agttgtggtagcacctttagtagaaaagatgatggaaaataacttaggtggtttggacatgtagtgtgaagacctatggattatgtagt-aggagggtag 171  Q
    ||||| ||||||||||||||||||||||||  |||||||   |||||||||||||| ||||||| | |||||| | | ||||||||||| ||||| ||||    
T  28497486 agttggggtagcacctttagtagaaaagattgtggaaaaaggcttaggtggtttgggcatgtagagagaagacttgtagattatgtagtaaggagagtag 28497585  T
Q  172 atcaaatgaaggata 186  Q
    |||| ||| ||||||    
T  28497586 atcagatggaggata 28497600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 173
Target Start/End: Complemental strand, 35555927 - 35555831
Alignment:
Q  79 ggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttggacatgtagtgtgaagacctatggattatgtag-taggagggtagat 173  Q
    |||||||||| |||||||||||||| | |||| || ||||||||||||||| ||| ||| | |||||||| |||||| ||||| |||||| ||||||    
T  35555927 ggtagcacctatagtagaaaagatggtagaaactagacttaggtggtttgggcatttagagagaagacctgtggattctgtagttaggagagtagat 35555831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 179
Target Start/End: Original strand, 54470203 - 54470311
Alignment:
Q  73 agttgtggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttggacatgtagtgtgaagacctatggattatgtagt-aggagggta 170  Q
    ||||| |||||||||| |||||||||||||| |||||| || ||||| ||||||||| ||||||| | |||||| | |  |||||||||| ||||| |||    
T  54470203 agttggggtagcacctatagtagaaaagatggtggaaactagacttaagtggtttgggcatgtagagagaagacatgtaaattatgtagtaaggagagta 54470302  T
Q  171 gatcaaatg 179  Q
     ||||||||    
T  54470303 aatcaaatg 54470311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 47611741 - 47611799
Alignment:
Q  91 agtagaaaagatgatggaaaata-acttaggtggtttggacatgtagtgtgaagaccta 148  Q
    |||||||||||||||||||||||  |||||||||||||| ||||||| | |||||||||    
T  47611741 agtagaaaagatgatggaaaataggcttaggtggtttgggcatgtagagagaagaccta 47611799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 161
Target Start/End: Original strand, 29398822 - 29398903
Alignment:
Q  81 tagcacctttagtagaaaagatgatggaaaata-acttaggtggtttggacatgtagtgtgaagacctatggattatgtagt 161  Q
    |||||||| | |||||||||||| |||||||||  |||| ||||||||| ||||||| | |||||||||| |||| ||||||    
T  29398822 tagcacctatggtagaaaagatggtggaaaatatgcttatgtggtttgggcatgtagagagaagacctatagattctgtagt 29398903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 175
Target Start/End: Original strand, 17900476 - 17900580
Alignment:
Q  73 agttgtggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttggacatgtagtgtgaagacctatggattatgtag-taggagggta 170  Q
    ||||| |||||||||| |||||||||||| | | |||| || ||| | ||||||||| || |||| | |||||||| |||||||||||| |||||| |||    
T  17900476 agttggggtagcacctatagtagaaaagacggtagaaactagactcatgtggtttgggcacgtagagagaagacctgtggattatgtagataggagagta 17900575  T
Q  171 gatca 175  Q
    |||||    
T  17900576 gatca 17900580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 154
Target Start/End: Complemental strand, 42639296 - 42639224
Alignment:
Q  83 gcacctttagtagaaaagatgatggaaaataa-cttaggtggtttggacatgtagtgtgaagacctatggatt 154  Q
    |||||| |||||||||||||| ||||||  |  |||||||||||||||||||||| | |||||| ||||||||    
T  42639296 gcacctatagtagaaaagatggtggaaaccaggcttaggtggtttggacatgtagagagaagacttatggatt 42639224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 154
Target Start/End: Complemental strand, 51252747 - 51252665
Alignment:
Q  73 agttgtggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttggacatgtagtgtgaagacctatggatt 154  Q
    ||||| |||||||||| |||||||||||||| |||||| ||  |||||||||| ||| ||||||| | |||||| | ||||||    
T  51252747 agttggggtagcacctctagtagaaaagatggtggaaactaggcttaggtggtatgggcatgtagagagaagacatgtggatt 51252665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 135
Target Start/End: Original strand, 31459032 - 31459089
Alignment:
Q  79 ggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttggacatgta 135  Q
    |||||||||| |||||||||||||| | |||||||  |||||||||||||| ||||||    
T  31459032 ggtagcacctatagtagaaaagatggtagaaaataggcttaggtggtttgggcatgta 31459089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 161
Target Start/End: Original strand, 41192832 - 41192921
Alignment:
Q  73 agttgtggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttggacatgtagtgtgaagacctatggattatgtagt 161  Q
    ||||| ||||||||||  ||||||||||||| |||||| || ||||||||| ||||  ||||||| | |||||||| | |||| ||||||    
T  41192832 agttggggtagcacctacagtagaaaagatggtggaaactagacttaggtgatttgtgcatgtagagagaagacctgtagattctgtagt 41192921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 135
Target Start/End: Complemental strand, 55768781 - 55768724
Alignment:
Q  79 ggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttggacatgta 135  Q
    |||||||||| ||||||||||||| ||||||||||   ||||||||||| ||||||||    
T  55768781 ggtagcacctatagtagaaaagatcatggaaaataggtttaggtggtttagacatgta 55768724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 135
Target Start/End: Complemental strand, 55833037 - 55832980
Alignment:
Q  79 ggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttggacatgta 135  Q
    |||||||||| ||||||||||||| ||||||||||   ||||||||||| ||||||||    
T  55833037 ggtagcacctatagtagaaaagatcatggaaaataggtttaggtggtttagacatgta 55832980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 161
Target Start/End: Complemental strand, 42285969 - 42285897
Alignment:
Q  90 tagtagaaaagatgatggaaaata-acttaggtggtttggacatgtagtgtgaagacctatggattatgtagt 161  Q
    |||||||||||||| | |||| || ||||||||||||||| ||||||  | |||||||| |||||| ||||||    
T  42285969 tagtagaaaagatggtagaaactagacttaggtggtttgggcatgtatagagaagacctgtggattctgtagt 42285897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 135
Target Start/End: Original strand, 49987435 - 49987487
Alignment:
Q  84 cacctttagtagaaaagatgatggaaaata-acttaggtggtttggacatgta 135  Q
    ||||| |||||||||||||| |||||||||  |||||||||||||| ||||||    
T  49987435 cacctatagtagaaaagatggtggaaaataggcttaggtggtttggtcatgta 49987487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 73 - 192
Target Start/End: Original strand, 2544595 - 2544716
Alignment:
Q  73 agttgtggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttggacatgtagtgtgaagacctatggattatgtagt-aggagggta 170  Q
    ||||| |||||||||| |||||||||||||| ||||||| | ||||||||||||||||||||||| | |||||||||| |||| | |||| ||||| |||    
T  2544595 agttggggtagcacctatagtagaaaagatggtggaaaacagacttaggtggtttggacatgtagagagaagacctatagattctatagtaaggagagta 2544694  T
Q  171 gatcaaatgaaggataatcaaa 192  Q
    ||||| ||| |||||| |||||    
T  2544695 gatcagatggaggatagtcaaa 2544716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 186
Target Start/End: Complemental strand, 35828863 - 35828721
Alignment:
Q  46 gattagaaatgaaaatattaataagaaagttgtggtagcacctttagtagaaaagatgatggaaaataac-ttaggtggtttggacatgtagtgtgaaga 144  Q
    |||||||||||| |||||||   ||| ||||   ||||||||| | |||||||||||| |||||||||   ||||||||||||||| ||||| | |||||    
T  35828863 gattagaaatgacaatattagagagagagtttgagtagcacctatggtagaaaagatggtggaaaatagggttaggtggtttggacgtgtagagagaaga 35828764  T
Q  145 cctatggattatgtagt-aggagggtagatcaaatgaaggata 186  Q
    ||||| ||||||||||| ||||| | |||||| ||| ||||||    
T  35828763 cctatagattatgtagtaaggagagaagatcatatggaggata 35828721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 147
Target Start/End: Complemental strand, 27848091 - 27848016
Alignment:
Q  73 agttgtggtagcacctttagtagaaaagatgatggaaaataa-cttaggtggtttggacatgtagtgtgaagacct 147  Q
    |||||||||||||||| | |||||||||||| | |||||||| |||||||||||||| |||| || | ||||||||    
T  27848091 agttgtggtagcacctgtggtagaaaagatggtagaaaataagcttaggtggtttgggcatgcagagagaagacct 27848016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 162
Target Start/End: Original strand, 43423715 - 43423805
Alignment:
Q  73 agttgtggtagcacctttagtagaaaagatgatggaaaataa-cttaggtggtttggacatgtagtgtgaagacctatggattatgtagta 162  Q
    ||||| |||| ||||| |||||||||||||| |||||| ||  |||||||||||||| ||||||| | |||||| | | ||||||||||||    
T  43423715 agttggggtaacacctatagtagaaaagatggtggaaactaggcttaggtggtttggccatgtagagagaagacttgtagattatgtagta 43423805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 186
Target Start/End: Complemental strand, 36340082 - 36339974
Alignment:
Q  80 gtagcacctttagtagaaaagatgatggaaaataactt-aggtggtttggacatgtagtgtgaagacctatggattatgtagt-aggagggtagatcaaa 177  Q
    ||||||||| || ||||||||||| |||||||||  || ||||||||| |||||| || | |||||||||| |||| |||||| ||| |||| ||||| |    
T  36340082 gtagcacctatattagaaaagatggtggaaaataggtttaggtggtttagacatggagagagaagacctatagattttgtagtaaggcgggttgatcaga 36339983  T
Q  178 tgaaggata 186  Q
    || ||||||    
T  36339982 tggaggata 36339974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 162
Target Start/End: Complemental strand, 48431686 - 48431602
Alignment:
Q  79 ggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttggacatgtagtgtgaagacctatggattatgtagta 162  Q
    |||||| ||| |||||||||||||| |||||||||  |||||||||||||| ||||||| | |||||| | | |||| |||||||    
T  48431686 ggtagcccctatagtagaaaagatggtggaaaataggcttaggtggtttgggcatgtagagagaagacttgtagattttgtagta 48431602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 193
Target Start/End: Complemental strand, 10569310 - 10569231
Alignment:
Q  115 cttaggtggtttggacatgtagtgtgaagacctatggattatgtagta-ggagggtagatcaaatgaaggataatcaaat 193  Q
    |||||||||||||| ||||||| | |||||||| | |||| ||||||| ||||||||||| | ||| ||| |||||||||    
T  10569310 cttaggtggtttgggcatgtagagagaagacctgtagattctgtagtacggagggtagattagatggagggtaatcaaat 10569231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 162
Target Start/End: Complemental strand, 19908350 - 19908235
Alignment:
Q  48 ttagaaatgaaaatattaataagaaagttgtggtagcacctttagtagaaaagatgatggaaaataa-cttaggtggtttggacatgtagtgtgaagacc 146  Q
    |||||||||| || |||||  ||| |||||||||||||||| ||||| ||||||||  |||||  ||  ||||||| ||||| ||||||| | ||| |||    
T  19908350 ttagaaatgacaaaattaaagagagagttgtggtagcacctatagtaaaaaagatgggggaaaccaagtttaggtgatttgggcatgtagagagaaaacc 19908251  T
Q  147 tatggattatgtagta 162  Q
    | | ||||||||||||    
T  19908250 tgtagattatgtagta 19908235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 154
Target Start/End: Original strand, 1661426 - 1661508
Alignment:
Q  73 agttgtggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttggacatgtagtgtgaagacctatggatt 154  Q
    ||||| |||||||||| |||||||||||||| |||||||||  || || |||||||  ||||||| | |||||||||| ||||    
T  1661426 agttggggtagcacctatagtagaaaagatggtggaaaataggctcagatggtttgagcatgtagagagaagacctatagatt 1661508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 126
Target Start/End: Complemental strand, 52561897 - 52561843
Alignment:
Q  73 agttgtggtagcacctttagtagaaaagatgatggaaaata-acttaggtggttt 126  Q
    ||||| |||||||||||||||||||| |||||| |||||||  ||||||||||||    
T  52561897 agttggggtagcacctttagtagaaatgatgatagaaaataggcttaggtggttt 52561843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 8343143 - 8343062
Alignment:
Q  74 gttgtggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttggacatgtagtgtgaagacctatggatt 154  Q
    |||| |||| |||||||||||||||||||| |||||| ||  |||||||||  ||| ||||||| | |||||||| ||||||    
T  8343143 gttggggtaacacctttagtagaaaagatggtggaaactaggcttaggtggactgggcatgtagagagaagacctgtggatt 8343062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 146
Target Start/End: Original strand, 9509283 - 9509388
Alignment:
Q  42 atatgattagaaatgaaaatattaataagaaagttgtggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttggacatgtagtgtg 140  Q
    |||||||||||||||| |  ||||   ||| ||||| |||||||||| |||||||||||||| |  ||||||  ||||||| |||||| ||||||| | |    
T  9509283 atatgattagaaatgacaccattagagagagagttggggtagcacctatagtagaaaagatggtaaaaaataggcttaggtagtttgggcatgtagagag 9509382  T
Q  141 aagacc 146  Q
    ||||||    
T  9509383 aagacc 9509388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 147
Target Start/End: Complemental strand, 32404806 - 32404737
Alignment:
Q  79 ggtagcacctttagtagaaaagatgatggaaaataa-cttaggtggtttggacatgtagtgtgaagacct 147  Q
    |||| ||||| ||||| |||||||| |||||||||  ||||||||||||||| |||||| | ||||||||    
T  32404806 ggtaacacctatagtaaaaaagatggtggaaaataggcttaggtggtttggatatgtagagagaagacct 32404737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 147
Target Start/End: Original strand, 5338727 - 5338795
Alignment:
Q  80 gtagcacctttagtagaaaagatgatggaaaat-aacttaggtggtttggacatgtagtgtgaagacct 147  Q
    ||||||||| |||||||||||||| |||||| | | |||||||||||||| |||| || | ||||||||    
T  5338727 gtagcacctatagtagaaaagatggtggaaactgagcttaggtggtttgggcatgcagagagaagacct 5338795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 15085936 - 15086004
Alignment:
Q  79 ggtagcacctttagtagaaaagatgatggaaaataa-cttaggtggtttggacatgtagtgtgaagacc 146  Q
    |||||||||| ||||||||||| || | |||||||  ||||| |||||||||||||||| | |||||||    
T  15085936 ggtagcacctatagtagaaaagttggtagaaaataggcttagatggtttggacatgtagagagaagacc 15086004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 186
Target Start/End: Original strand, 40416374 - 40416482
Alignment:
Q  80 gtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttggacatgtagtgtgaagacctatggattatgtagt-aggagggtagatcaaa 177  Q
    ||||||||| |||||||||||||| ||||||  |  |||||||||||| | ||||||| | ||||| || | |||| |||||| ||||| |||||||| |    
T  40416374 gtagcacctatagtagaaaagatggtggaaacgaggcttaggtggtttaggcatgtagagagaagaactgtagattttgtagtaaggagagtagatcaga 40416473  T
Q  178 tgaaggata 186  Q
    || ||||||    
T  40416474 tgcaggata 40416482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 73 - 186
Target Start/End: Complemental strand, 43752233 - 43752118
Alignment:
Q  73 agttgtggtagcacctttagtagaaaagatgatggaaaataa-cttaggtggtttggacatgtagtgtgaagacctatggattatgtagta-ggagggta 170  Q
    ||||| |||||||||| ||||||||||| || | |||||||  |||||||| ||||||||||||| | |||||||||| |||||||||||| |||| |||    
T  43752233 agttggggtagcacctatagtagaaaaggtggtagaaaataggcttaggtgatttggacatgtagagagaagacctatagattatgtagtagggagagta 43752134  T
Q  171 gatcaaatgaaggata 186  Q
    ||||| ||| ||||||    
T  43752133 gatcagatggaggata 43752118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 147
Target Start/End: Complemental strand, 9578972 - 9578914
Alignment:
Q  90 tagtagaaaagatgatggaaaata-acttaggtggtttggacatgtagtgtgaagacct 147  Q
    |||||| |||||||||| |||||| ||||||||||||||||||||||| | ||||||||    
T  9578972 tagtagtaaagatgatgtaaaatagacttaggtggtttggacatgtagagagaagacct 9578914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 179
Target Start/End: Complemental strand, 23714541 - 23714439
Alignment:
Q  79 ggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttggacatgtagtgtgaagacctatggattatgtagt-aggagggtagatcaa 176  Q
    |||||||| | |||||||||||||| |||||| || ||||| || |||| | ||||||| | |||||| | ||||||||||||| ||||| |||||||||    
T  23714541 ggtagcacatatagtagaaaagatggtggaaactagacttatgtagtttaggcatgtagagagaagacttgtggattatgtagtaaggagagtagatcaa 23714442  T
Q  177 atg 179  Q
    |||    
T  23714441 atg 23714439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 179
Target Start/End: Complemental strand, 24102213 - 24102111
Alignment:
Q  79 ggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttggacatgtagtgtgaagacctatggattatgtagt-aggagggtagatcaa 176  Q
    |||||||| | |||||||||||||| |||||| || ||||| || |||| | ||||||| | |||||| | ||||||||||||| ||||| |||||||||    
T  24102213 ggtagcacatatagtagaaaagatggtggaaactagacttatgtagtttaggcatgtagagagaagacttgtggattatgtagtaaggagagtagatcaa 24102114  T
Q  177 atg 179  Q
    |||    
T  24102113 atg 24102111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 186
Target Start/End: Original strand, 3481180 - 3481252
Alignment:
Q  115 cttaggtggtttggacatgtagtgtgaagacctatggattatgtag-taggagggtagatcaaatgaaggata 186  Q
    |||||||||||||||||||||| | |||||||||| |||| |||||  ||||| |||||||| ||| ||||||    
T  3481180 cttaggtggtttggacatgtagagagaagacctatagattctgtagcaaggagagtagatcagatggaggata 3481252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 128
Target Start/End: Original strand, 18958903 - 18958959
Alignment:
Q  73 agttgtggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttgg 128  Q
    ||||| |||||||||| |||||||||||||| |||||||||  ||||||||||||||    
T  18958903 agttggggtagcacctatagtagaaaagatggtggaaaataggcttaggtggtttgg 18958959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 146
Target Start/End: Complemental strand, 45367905 - 45367837
Alignment:
Q  79 ggtagcacctttagtagaaaagatgatggaaaataa-cttaggtggtttggacatgtagtgtgaagacc 146  Q
    |||||||||| ||||||||||| || | |||||||| ||||| |||||||||||||||| | |||||||    
T  45367905 ggtagcacctatagtagaaaagttggtagaaaataaccttagatggtttggacatgtagagagaagacc 45367837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 153
Target Start/End: Original strand, 8180782 - 8180857
Alignment:
Q  79 ggtagcacctttagtagaaaagatgatggaaaataa-cttaggtggtttggacatgtagtgtgaagacctatggat 153  Q
    |||||||||| ||||||||||| || | |||||||| ||||| |||||||| ||||||| | |||||||| |||||    
T  8180782 ggtagcacctatagtagaaaagttggtagaaaataagcttagatggtttgggcatgtagagagaagacctgtggat 8180857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 194
Target Start/End: Original strand, 12141540 - 12141663
Alignment:
Q  73 agttgtggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttggacatgtagtgtgaagacctatggattatgtagt-aggagggta 170  Q
    ||||| |||||||||| |||||||||||||| ||||||| |  |||||||||||||| || ||||   |||||||| | |||| | |||| ||||| |||    
T  12141540 agttggggtagcacctatagtagaaaagatggtggaaaagaggcttaggtggtttgggcacgtagaaagaagacctgtagattctctagtaaggagagta 12141639  T
Q  171 gatcaaatgaaggataatcaaatt 194  Q
    ||||| ||  |||||| |||||||    
T  12141640 gatcagattgaggatagtcaaatt 12141663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 153
Target Start/End: Original strand, 25834683 - 25834758
Alignment:
Q  79 ggtagcacctttagtagaaaagatgatggaaaataa-cttaggtggtttggacatgtagtgtgaagacctatggat 153  Q
    |||||||||| ||||||||||| || | |||||||  ||||| |||||||||||||||| | |||||||| |||||    
T  25834683 ggtagcacctatagtagaaaagttggtagaaaataggcttagatggtttggacatgtagagagaagacctgtggat 25834758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 179
Target Start/End: Original strand, 42543272 - 42543339
Alignment:
Q  113 aacttaggtggtttggacatgtagtgtgaagacctatggattatgtag-taggagggtagatcaaatg 179  Q
    |||||||||||||||| ||||||  | |||||||| |||||| ||||| |||||| ||||||||||||    
T  42543272 aacttaggtggtttgggcatgtacagagaagacctgtggattctgtagttaggagagtagatcaaatg 42543339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 11017285 - 11017339
Alignment:
Q  46 gattagaaatgaaaatattaataagaaagttgtggtagcacctttagtagaaaagat 102  Q
    |||||| ||||||||||||||  ||| ||||| |||||||||| |||||||||||||    
T  11017285 gattaggaatgaaaatattaa--agagagttgaggtagcacctatagtagaaaagat 11017339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 135
Target Start/End: Original strand, 19024182 - 19024239
Alignment:
Q  79 ggtagcacctttagtagaaaagatgatggaaaataa-cttaggtggtttggacatgta 135  Q
    |||||||||| || | ||||||||| |||||| ||| |||||||||||||||||||||    
T  19024182 ggtagcacctatatttgaaaagatggtggaaagtaagcttaggtggtttggacatgta 19024239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 136
Target Start/End: Original strand, 6218963 - 6219027
Alignment:
Q  73 agttgtggtagcacctttagtagaaaagatgatggaaaataa-cttaggtggtttggacatgtag 136  Q
    ||||| |||||||| | |||||||||||||  |||| ||||  ||||||||||||||||||||||    
T  6218963 agttggggtagcacttatagtagaaaagatagtggataataggcttaggtggtttggacatgtag 6219027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 145
Target Start/End: Complemental strand, 9556685 - 9556582
Alignment:
Q  42 atatgattagaaatgaaaatattaataagaaagttgtggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttggacatgtagtgtg 140  Q
    |||||||||||||||| || ||||   ||||||||| |||| ||| | |||||||||| ||| |||||||||  |||||||||||| | ||||||| | |    
T  9556685 atatgattagaaatgacaacattagagagaaagttggggtaacacttatagtagaaaa-atggtggaaaataggcttaggtggtttaggcatgtagagag 9556587  T
Q  141 aagac 145  Q
    |||||    
T  9556586 aagac 9556582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 146
Target Start/End: Complemental strand, 11992388 - 11992320
Alignment:
Q  79 ggtagcacctttagtagaaaagatgatggaaaataa-cttaggtggtttggacatgtagtgtgaagacc 146  Q
    |||||||||| ||||||||||| || | |||||||| ||||| |||||||||||| ||| | |||||||    
T  11992388 ggtagcacctatagtagaaaagttggtagaaaataagcttagatggtttggacatatagagagaagacc 11992320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 136
Target Start/End: Original strand, 41330125 - 41330189
Alignment:
Q  73 agttgtggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttggacatgtag 136  Q
    ||||| |||| ||||||||||||||||||||||  ||||||  ||||| ||||||| ||||||||    
T  41330125 agttgaggtaacacctttagtagaaaagatgatcaaaaataggcttagatggtttgaacatgtag 41330189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 73 - 186
Target Start/End: Complemental strand, 14389453 - 14389339
Alignment:
Q  73 agttgtggtagcacctttagtagaaaagatgatggaaaataacttaggtggtttggacatgtagtgtgaagacctatggattatgtagt-aggagggtag 171  Q
    ||||| |||||||||| | |||||||||||| ||||||  |||||||||||||||||||||||| | |||||||||| || | |||||| |||||  |||    
T  14389453 agttgaggtagcacctatcgtagaaaagatggtggaaacaaacttaggtggtttggacatgtagagagaagacctatagactttgtagtaaggagaatag 14389354  T
Q  172 atcaaatgaaggata 186  Q
    |||| ||| ||||||    
T  14389353 atcagatggaggata 14389339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 244
Target Start/End: Complemental strand, 9593992 - 9593821
Alignment:
Q  73 agttgtggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttggacatgtagtgtgaagacctatggattatgtagt-aggagggta 170  Q
    ||||| ||||||||| ||||||||||||||| | |||||||  |||||||||||||| ||||||| | |||||| | | |||  |||||| || || |||    
T  9593992 agttggggtagcaccattagtagaaaagatggtagaaaataggcttaggtggtttgggcatgtagagagaagacatgtagatgctgtagtaagaagagta 9593893  T
Q  171 gatcaaatgaaggataatcaaattcttcaaga--tagatgaagaactagaaattttttaagagaaactattaggaa 244  Q
    ||||| ||| |||| | |||||    ||||||  |||| ||||| |||||||  || |||||||||||||||||||    
T  9593892 gatcagatggaggagagtcaaa----tcaagaggtagaggaagacctagaaaaattataagagaaactattaggaa 9593821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 147
Target Start/End: Original strand, 608159 - 608228
Alignment:
Q  79 ggtagcacctttagtagaaaagatgatggaaaataa-cttaggtggtttggacatgtagtgtgaagacct 147  Q
    |||| ||||| ||||||||||| |||| |||||||  ||||| |||||||||||||||| | ||||||||    
T  608159 ggtatcacctatagtagaaaagttgatagaaaataggcttagatggtttggacatgtagagagaagacct 608228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 147
Target Start/End: Original strand, 33084028 - 33084129
Alignment:
Q  47 attagaaatgaaaatattaataagaaagttgtggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttggacatgtagtgtgaagac 145  Q
    |||||||||||  ||||||   ||| ||||| |||||||||| | |||||||||||| | |||| || |||||||||||||||  |||||| | ||||||    
T  33084028 attagaaatgacgatattagagagagagttggggtagcacctatggtagaaaagatggtagaaactagacttaggtggtttgggaatgtagagagaagac 33084127  T
Q  146 ct 147  Q
    ||    
T  33084128 ct 33084129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 146
Target Start/End: Complemental strand, 5258428 - 5258360
Alignment:
Q  79 ggtagcacctttagtagaaaagatgatggaaaataa-cttaggtggtttggacatgtagtgtgaagacc 146  Q
    |||||||||| ||||||||||| || | |||||||  ||||| |||||||||||||||| | |||||||    
T  5258428 ggtagcacctatagtagaaaagttggtagaaaataggcttagatggtttggacatgtagagagaagacc 5258360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 182
Target Start/End: Original strand, 24665818 - 24665918
Alignment:
Q  85 acctttagtagaaaagatgatggaaaataa-cttaggtggtttggacatgtagtgtgaagacctatgga-ttatgtagt-aggagggtagatcaaatgaa 181  Q
    |||| |||||||||| ||| | |||||||  |||||||||||||||||||||| | |||||||| | || || |||||| ||||| |||||||| |||||    
T  24665818 acctatagtagaaaatatggtagaaaataggcttaggtggtttggacatgtagagagaagacctgtagatttttgtagtaaggagagtagatcagatgaa 24665917  T
Q  182 g 182  Q
    |    
T  24665918 g 24665918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 73 - 185
Target Start/End: Original strand, 79509 - 79623
Alignment:
Q  73 agttgtggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttggacatgtagtgtgaagacctatggattatgtagt-aggagggta 170  Q
    ||||| ||||| |||| |||||||||||||| ||||||| | | ||||||||||||||||||||| | |||||||||| |||| |||||| ||||| ||     
T  79509 agttggggtagtacctatagtagaaaagatggtggaaaacataattaggtggtttggacatgtagagagaagacctatagattctgtagtaaggagagtc 79608  T
Q  171 gatcaaatgaaggat 185  Q
    ||||||||| |||||    
T  79609 gatcaaatggaggat 79623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 73 - 157
Target Start/End: Original strand, 33667212 - 33667297
Alignment:
Q  73 agttgtggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttggacatgtagtgtgaagacctatggattatg 157  Q
    ||||| |||||||||| |||||||||||||| | |||| || ||||||||||||||| ||||||| | |||||||| |||||||||    
T  33667212 agttggggtagcacctatagtagaaaagatggtagaaactagacttaggtggtttgggcatgtagagagaagacctgtggattatg 33667297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 31636210 - 31636132
Alignment:
Q  69 agaaagttgtggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttggacatgtagtgtgaagacc 146  Q
    ||||||||| |||||||||| |||||||||||||| | |||| || ||||||||||||||| ||||||| | |||||||    
T  31636210 agaaagttggggtagcacctatagtagaaaagatggtagaaactagacttaggtggtttgggcatgtagagagaagacc 31636132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 158
Target Start/End: Original strand, 6888958 - 6889075
Alignment:
Q  42 atatgattagaaatgaaaatattaataagaaagttgtggtagcacctttagtagaaaagatgatggaaaataa-cttaggtggtttggacatgtagtgtg 140  Q
    |||||||||||||||| |||||||   | | ||||| |||||||| | |||  ||||||||| |||||||||  |||| ||||||||||||||||| | |    
T  6888958 atatgattagaaatgacaatattacagaaagagttggggtagcacgtatagaggaaaagatggtggaaaataggcttaagtggtttggacatgtagagag 6889057  T
Q  141 aagacctatggattatgt 158  Q
    ||||| | ||||||||||    
T  6889058 aagacttgtggattatgt 6889075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 128
Target Start/End: Original strand, 14667759 - 14667815
Alignment:
Q  73 agttgtggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttgg 128  Q
    ||||| |||||||||| |||||||||||||| ||||||||| |||||||||||||||    
T  14667759 agttggggtagcacctatagtagaaaagatggtggaaaatagacttaggtggtttgg 14667815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 27895 - 27944
Alignment:
Q  79 ggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttg 127  Q
    |||||||||| ||||||||||||||||||||||||  |||||||||||||    
T  27895 ggtagcacctatagtagaaaagatgatggaaaataggcttaggtggtttg 27944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 162
Target Start/End: Original strand, 6859346 - 6859467
Alignment:
Q  42 atatgattagaaatgaaaatattaataagaaagttgtggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttggacatgtagtgtg 140  Q
    |||||||||||||||| |||||||   ||| ||||| |||||||||| ||||  | |||||| ||||||| |  | ||||||||||||||| |||| | |    
T  6859346 atatgattagaaatgacaatattagacagagagttggggtagcacctatagtgaagaagatggtggaaaacaggcataggtggtttggacacgtagagag 6859445  T
Q  141 aagacctatggattatgtagta 162  Q
    ||||| | |||||| |||||||    
T  6859446 aagacttgtggattctgtagta 6859467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 154
Target Start/End: Original strand, 14749276 - 14749385
Alignment:
Q  46 gattagaaatgaaaatattaataagaaagttgtggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttggacatgtagtgtgaaga 144  Q
    ||||||||||||||| ||||   ||| |||||  ||||||||| ||||||||||  || | |||| || |||||| |||||||||||||||| | |||||    
T  14749276 gattagaaatgaaaacattagagagagagttggtgtagcacctatagtagaaaaattggtagaaactagacttagatggtttggacatgtagagagaaga 14749375  T
Q  145 cctatggatt 154  Q
    ||| ||||||    
T  14749376 cctgtggatt 14749385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 175
Target Start/End: Original strand, 42199298 - 42199386
Alignment:
Q  89 ttagtagaaaagatgatggaaaata-acttaggtggtttggacatgtagtgtgaagacctatggattatgtagt-aggagggtagatca 175  Q
    ||||||||||||||| |||||| || ||||||||||||||| ||||||| | |||||| | | |||| |||||| ||||| ||||||||    
T  42199298 ttagtagaaaagatggtggaaactagacttaggtggtttgggcatgtagagagaagacatgtagattctgtagtaaggagagtagatca 42199386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 113
Target Start/End: Original strand, 37124539 - 37124603
Alignment:
Q  47 attagaaatgaaaatattaataagaaagttgtggtagcacctttagtagaaaagatgatggaaaata 113  Q
    |||||||||||||| |||||  ||| ||| | |||||||||| |||| |||||||||||||||||||    
T  37124539 attagaaatgaaaaaattaa--agagagtcggggtagcacctatagttgaaaagatgatggaaaata 37124603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 193
Target Start/End: Original strand, 2712940 - 2713062
Alignment:
Q  73 agttgtggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttggacatgtagtgtgaagacctatggattatgta-gtaggagggta 170  Q
    ||||| |||||||||| ||||  |||||||| | || | || ||||||||||||||| ||||||| | |||||||| |||||| |||| | ||||| |||    
T  2712940 agttggggtagcacctatagtctaaaagatggtagagactagacttaggtggtttgggcatgtagagagaagacctgtggattctgtatgaaggagagta 2713039  T
Q  171 gatcaaatgaaggataatcaaat 193  Q
    ||||| ||| |||| | ||||||    
T  2713040 gatcagatggaggagagtcaaat 2713062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 147
Target Start/End: Original strand, 28676597 - 28676666
Alignment:
Q  79 ggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttggacatgtagtgtgaagacct 147  Q
    ||||||| || |||||||||||||| |||||||||  |||||||||||| | ||||||| | ||||||||    
T  28676597 ggtagcagctatagtagaaaagatggtggaaaatagtcttaggtggtttcggcatgtagagagaagacct 28676666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 14665716 - 14665784
Alignment:
Q  79 ggtagcacctttagtagaaaagatgatggaaaataa-cttaggtggtttggacatgtagtgtgaagacc 146  Q
    |||||||||| ||||||| ||| |||| |||||||  ||||| |||||||||||||||| | |||||||    
T  14665716 ggtagcacctatagtagagaagttgatagaaaataggcttagatggtttggacatgtagagagaagacc 14665784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 134
Target Start/End: Original strand, 15168794 - 15168850
Alignment:
Q  79 ggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttggacatgt 134  Q
    |||||||||| |||||||||||||| | |||||||  || |||||||||||||||||    
T  15168794 ggtagcacctatagtagaaaagatggtagaaaataggctaaggtggtttggacatgt 15168850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 146
Target Start/End: Complemental strand, 16347658 - 16347590
Alignment:
Q  79 ggtagcacctttagtagaaaagatgatggaaaataa-cttaggtggtttggacatgtagtgtgaagacc 146  Q
    |||||||||| ||||||||||| || | |||||||  ||||| |||||||||||||||| | |||||||    
T  16347658 ggtagcacctatagtagaaaagttggtagaaaataggcttagatggtttggacatgtagagagaagacc 16347590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 38684969 - 38685037
Alignment:
Q  79 ggtagcacctttagtagaaaagatgatggaaaataa-cttaggtggtttggacatgtagtgtgaagacc 146  Q
    |||||||||| ||||||||||| || | |||||||  ||||| |||||||||||||||| | |||||||    
T  38684969 ggtagcacctatagtagaaaagttggtagaaaataggcttagatggtttggacatgtagagagaagacc 38685037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 46 - 136
Target Start/End: Complemental strand, 54365287 - 54365199
Alignment:
Q  46 gattagaaatgaaaatattaataagaaagttgtggtagcacctttagtagaaaagatgatggaaaataacttaggtggtttggacatgtag 136  Q
    ||||||||||||||||||||   ||| ||||| |||||||||| |||||||||| |||  |||||||| |||||||||||||| |||||||    
T  54365287 gattagaaatgaaaatattag--agagagttggggtagcacctatagtagaaaatatggcggaaaatagcttaggtggtttgggcatgtag 54365199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 178
Target Start/End: Complemental strand, 36820247 - 36820140
Alignment:
Q  73 agttgtggtagcacctttagtagaaaagatgatggaaaataa-cttaggtggtttggacatgtagtgtgaagacctatggattatgtagt-aggagggta 170  Q
    ||||| |||||||||| || ||| ||||||| |||||| ||  |||||||||||| ||||||||  | ||||||| || ||||||||||| |||||||||    
T  36820247 agttggggtagcacctatattagcaaagatggtggaaactaggcttaggtggtttagacatgtaaagagaagacccatagattatgtagtaaggagggta 36820148  T
Q  171 gatcaaat 178  Q
    ||||||||    
T  36820147 gatcaaat 36820140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 150
Target Start/End: Complemental strand, 50960919 - 50960841
Alignment:
Q  73 agttgtggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttggacatgtagtgtgaagacctatg 150  Q
    ||||| |||||||||| |||||||||||||| | |||||||  |||||||||||||| ||||||| | |||||||||||    
T  50960919 agttggggtagcacctatagtagaaaagatggtagaaaataggcttaggtggtttgggcatgtagagagaagacctatg 50960841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 136
Target Start/End: Original strand, 26490311 - 26490375
Alignment:
Q  73 agttgtggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttggacatgtag 136  Q
    ||||| |||||||||| |||||||||||||| | |||||||  ||||||||||||||||||||||    
T  26490311 agttgaggtagcacctatagtagaaaagatggtagaaaataggcttaggtggtttggacatgtag 26490375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 81 - 186
Target Start/End: Complemental strand, 42510292 - 42510187
Alignment:
Q  81 tagcacctttagtagaaaagatgatggaaaataa-cttaggtggtttggacatgtagtgtgaagacctatggattatgtagt-aggagggtagatcaaat 178  Q
    |||||||| |||||||||||||  |||||||||  |||||||||||||||||||||  | |||||||||| |||| ||| || ||||| |||||||| ||    
T  42510292 tagcacctatagtagaaaagatagtggaaaataggcttaggtggtttggacatgta--gagaagacctatagattttgtggtaaggagagtagatcagat 42510195  T
Q  179 gaaggata 186  Q
    | ||||||    
T  42510194 ggaggata 42510187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 132
Target Start/End: Complemental strand, 44134116 - 44134056
Alignment:
Q  73 agttgtggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttggacat 132  Q
    ||||| |||||| ||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  44134116 agttggggtagcgcctctagtagaaaagatggtggaaaatagacttaggtggtttggacat 44134056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 136
Target Start/End: Original strand, 27917562 - 27917630
Alignment:
Q  69 agaaagttgtggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttggacatgtag 136  Q
    ||||||||| |||||||||| |||||||||||||| | | |||||  ||||| ||||||||||||||||    
T  27917562 agaaagttggggtagcacctatagtagaaaagatggtaggaaataggcttagatggtttggacatgtag 27917630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 146
Target Start/End: Complemental strand, 49503834 - 49503766
Alignment:
Q  79 ggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttggacatgtagtgtgaagacc 146  Q
    |||||||||| |||||||||||||| | |||||||  |||||||||||||| ||||||| | |||||||    
T  49503834 ggtagcacctatagtagaaaagatggtagaaaataggcttaggtggtttgggcatgtagagagaagacc 49503766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 160
Target Start/End: Complemental strand, 39600994 - 39600879
Alignment:
Q  46 gattagaaatgaaaatattaataagaaagttgtggtagcacctttagtagaaaagatgatggaaaataa-cttaggtggtttggacatgtagtgtgaaga 144  Q
    |||||||||||| || ||||   ||| ||||| ||||| |||| |||||||||||||| ||||||| || |||||||||||| | ||||||  | |||||    
T  39600994 gattagaaatgacaacattagagagagagttggggtagtacctatagtagaaaagatggtggaaaacaagcttaggtggttttggcatgtaaagagaaga 39600895  T
Q  145 cctatggattatgtag 160  Q
    ||| | |||| |||||    
T  39600894 cctgtagattctgtag 39600879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 74 - 136
Target Start/End: Original strand, 54128375 - 54128438
Alignment:
Q  74 gttgtggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttggacatgtag 136  Q
    |||| |||||||||| |||||||||||||| | |||||||  |||||||||||||| |||||||    
T  54128375 gttggggtagcacctatagtagaaaagatggtagaaaataggcttaggtggtttgggcatgtag 54128438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 161
Target Start/End: Complemental strand, 2340999 - 2340911
Alignment:
Q  74 gttgtggtagcacctttagtagaaaagatgatggaaaat-aacttaggtggtttggacatgtagtgtgaagacctatggattatgtagt 161  Q
    |||| ||||||||| || |||||||||||| |||||||| | |||| ||||||||  ||||||| |  |||| |||| |||||||||||    
T  2340999 gttggggtagcaccattcgtagaaaagatggtggaaaatcatcttacgtggtttgagcatgtagagaaaagatctatagattatgtagt 2340911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 21200561 - 21200617
Alignment:
Q  90 tagtagaaaagatgatggaaaata-acttaggtggtttggacatgtagtgtgaagac 145  Q
    |||||||||||||| |||||| || ||||||||||||||| ||||||| | ||||||    
T  21200561 tagtagaaaagatggtggaaactagacttaggtggtttgggcatgtagagagaagac 21200617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 175
Target Start/End: Complemental strand, 34719358 - 34719254
Alignment:
Q  73 agttgtggtagcacctttagtagaaaagatgatggaaaat-aacttaggtggtttggacatgtagtgtgaagacctatggattatgtagt-aggagggta 170  Q
    ||||| |||||||||| | |||||||||||| |||||| | |||||||||| |||| |||| ||| | |||| ||| | |||| |||||| ||||| |||    
T  34719358 agttggggtagcacctatcgtagaaaagatggtggaaagtcaacttaggtgttttgaacatatagagagaaggcctgttgattttgtagtaaggagagta 34719259  T
Q  171 gatca 175  Q
    |||||    
T  34719258 gatca 34719254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 146
Target Start/End: Complemental strand, 47233876 - 47233808
Alignment:
Q  79 ggtagcacctttagtagaaaagatgatggaaaataa-cttaggtggtttggacatgtagtgtgaagacc 146  Q
    |||||||||| ||||||||||| || | |||||||  ||||| |||||||||||||||| | |||||||    
T  47233876 ggtagcacctatagtagaaaagttggtagaaaataggcttagatggtttggacatgtagagagaagacc 47233808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 79 - 186
Target Start/End: Original strand, 36143367 - 36143476
Alignment:
Q  79 ggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttggacatgtagtgtgaagacctatggattatgtagta-ggagggtagatcaa 176  Q
    |||||||||| ||| |||| ||||| ||||||||| ||||||||||||||| ||| ||| |  ||||||||| |||| ||||||| |||| |||||||||    
T  36143367 ggtagcacctatagcagaatagatggtggaaaatagacttaggtggtttgggcatttagagaaaagacctatagattctgtagtatggagagtagatcaa 36143466  T
Q  177 atgaaggata 186  Q
    ||| ||||||    
T  36143467 atggaggata 36143476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 45512808 - 45512725
Alignment:
Q  48 ttagaaatgaaaatattaataagaa--agttgtggtagcacctttagtagaaaagatgatggaaaataa-cttaggtggtttgg 128  Q
    |||||||||||||||||||  |||   ||||| |||||||||| ||||||||||||||||||||||||| ||||| ||||||||    
T  45512808 ttagaaatgaaaatattaaagagagggagttggggtagcacctatagtagaaaagatgatggaaaataagcttagatggtttgg 45512725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 154
Target Start/End: Complemental strand, 44681352 - 44681243
Alignment:
Q  46 gattagaaatgaaaatattaataagaaagttgtggtagcacctttagtagaaaagatgatggaaaataa-cttaggtggtttggacatgtagtgtgaaga 144  Q
    |||||||||||| || ||||   ||| |||||||||||||||| || ||||||||||| |||||||||| |||||  |||||||| || ||| | |||||    
T  44681352 gattagaaatgacaacattagagagacagttgtggtagcacctataatagaaaagatggtggaaaataagcttagaaggtttggaaatctagagagaaga 44681253  T
Q  145 cctatggatt 154  Q
    ||||| ||||    
T  44681252 cctatagatt 44681243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 194
Target Start/End: Complemental strand, 43904947 - 43904828
Alignment:
Q  80 gtagcacctttagtagaaaagatgatggaaaataa----cttaggtggtttggacatgtagtgtgaagacctatggattatgtagt-aggagggtagatc 174  Q
    |||||| || ||||||||||||||  |||||||||    |||||||||||||||||||||| | |||||||||| |||  |||||| || ||  ||||||    
T  43904947 gtagcatctatagtagaaaagatggaggaaaataataagcttaggtggtttggacatgtagagagaagacctatagatgttgtagtaagaagaatagatc 43904848  T
Q  175 aaatgaaggataatcaaatt 194  Q
    | ||| |||||| |||||||    
T  43904847 agatggaggatagtcaaatt 43904828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 178
Target Start/End: Original strand, 44373745 - 44373879
Alignment:
Q  46 gattagaaatgaaaatattaataagaaagttgtggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttggacatgtagtgtgaaga 144  Q
    ||||||||||||||||||||    || |||||  |||||||||  ||||||||||||| |||||||||  |||  ||||||||  ||||||| || ||||    
T  44373745 gattagaaatgaaaatattagagtgagagttggagtagcacctaaagtagaaaagatggtggaaaataggcttgagtggtttgagcatgtagagtaaaga 44373844  T
Q  145 cctatggattatgtagt-aggagggtagatcaaat 178  Q
    ||||| |||| |||||| | ||| |||||||||||    
T  44373845 cctatagattttgtagtaaagagagtagatcaaat 44373879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 136
Target Start/End: Complemental strand, 18752155 - 18752098
Alignment:
Q  79 ggtagcacctttagtagaaaagatgatggaaaataacttaggtggtttggacatgtag 136  Q
    |||||||||| ||||||||||| || | ||||||| ||||| ||||||||||||||||    
T  18752155 ggtagcacctatagtagaaaagttggtagaaaatagcttagatggtttggacatgtag 18752098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 127
Target Start/End: Original strand, 33511325 - 33511407
Alignment:
Q  42 atatgattagaaatgaaaatattaataagaaagttgtggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttg 127  Q
    |||||||||||||||||||||||    ||| ||||| |||| ||||| | |||||||| |||||| |||||| ||||||||||||||    
T  33511325 atatgattagaaatgaaaatatt----agagagttggggtaacacctatggtagaaaaaatgatgaaaaatagacttaggtggtttg 33511407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 136
Target Start/End: Complemental strand, 41444612 - 41444548
Alignment:
Q  73 agttgtggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttggacatgtag 136  Q
    ||||| |||||||||| |||||||||||||| |||||| ||   |||||||||||||||||||||    
T  41444612 agttggggtagcacctatagtagaaaagatggtggaaactaggtttaggtggtttggacatgtag 41444548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 128
Target Start/End: Complemental strand, 13171962 - 13171879
Alignment:
Q  46 gattagaaatgaaaatattaataagaaagttgtggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttgg 128  Q
    |||||||||||| || ||||   ||| ||||| || ||||||| |||||||||||||| |||||||||  ||||||||||||||    
T  13171962 gattagaaatgacaagattagagagagagttggggaagcacctatagtagaaaagatggtggaaaatatgcttaggtggtttgg 13171879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 145
Target Start/End: Complemental strand, 41972046 - 41971991
Alignment:
Q  91 agtagaaaagatgatggaaaataactt-aggtggtttggacatgtagtgtgaagac 145  Q
    ||||||||||||| |||||||||| || ||||||||||||||||||| | ||||||    
T  41972046 agtagaaaagatggtggaaaataagtttaggtggtttggacatgtagagagaagac 41971991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 136
Target Start/End: Original strand, 45419239 - 45419297
Alignment:
Q  79 ggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttggacatgtag 136  Q
    |||||||||| |||||||||||||| |  |||||| ||||||||||||||| |||||||    
T  45419239 ggtagcacctatagtagaaaagatggtataaaatagacttaggtggtttgggcatgtag 45419297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 186
Target Start/End: Complemental strand, 10824477 - 10824335
Alignment:
Q  42 atatgattagaaatgaaaatattaataagaaagttgtggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttggacatgtagtgtg 140  Q
    |||||||||||||| ||||||||    ||| ||||| || |||||||  ||||||||||||| | |||||||  ||||||||||||||  || ||| |      
T  10824477 atatgattagaaataaaaatatt----agagagttgaggcagcacctaaagtagaaaagatggtcgaaaataggcttaggtggtttgggtatttagagaa 10824382  T
Q  141 aagacctatggattatgtagta-ggagggtagatcaaatgaaggata 186  Q
    |||||  || |||| ||||||| |||| |||||||||||| ||||||    
T  10824381 aagactcatagattttgtagtatggagagtagatcaaatggaggata 10824335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 162
Target Start/End: Original strand, 32043560 - 32043676
Alignment:
Q  47 attagaaatgaaaatattaataagaaagttgtggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttggacatgtagtgtgaagac 145  Q
    ||||||||||| || ||||   ||| ||||| |||| ||||| ||||| |||||||| | |||| || |||| |||||||||| ||||||| | ||||||    
T  32043560 attagaaatgacaacattagagagagagttggggtatcacctatagtacaaaagatggtagaaactagactttggtggtttggccatgtagagagaagac 32043659  T
Q  146 ctatggattatgtagta 162  Q
    || |||||  |||||||    
T  32043660 ctgtggatgttgtagta 32043676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 35643870 - 35643814
Alignment:
Q  90 tagtagaaaagatgatggaaaata-acttaggtggtttggacatgtagtgtgaagac 145  Q
    |||||||||||||| |||||||||  |||||||||||||| ||||||| | ||||||    
T  35643870 tagtagaaaagatggtggaaaatatgcttaggtggtttgggcatgtagagagaagac 35643814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 183
Target Start/End: Complemental strand, 39953506 - 39953438
Alignment:
Q  116 ttaggtggtttggacatgtagtgtgaagacctatggattatgtagt-aggagggtagatcaaatgaagg 183  Q
    ||||||||||| | ||||||| | |  ||||||||||||||||||| ||||| |||||||| |||||||    
T  39953506 ttaggtggtttaggcatgtagagaggtgacctatggattatgtagtaaggagagtagatcagatgaagg 39953438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 73 - 179
Target Start/End: Complemental strand, 48736185 - 48736077
Alignment:
Q  73 agttgtggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttggacatgtagtgtgaagacctatggattatgtag-taggagggta 170  Q
    ||||| ||||||||||  |||||||||||||   |||| || ||||||||||||||  ||||||| | |||||||| |||||||||||| |||||| |||    
T  48736185 agttggggtagcacctacagtagaaaagatgggagaaactagacttaggtggtttgctcatgtagagcgaagacctgtggattatgtagttaggagagta 48736086  T
Q  171 gatcaaatg 179  Q
    |||||||||    
T  48736085 gatcaaatg 48736077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 175
Target Start/End: Complemental strand, 36514493 - 36514389
Alignment:
Q  73 agttgtggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttggacatgtagtgtgaagacctatggattatgtagta-ggagggta 170  Q
    ||||| |||||||||| |||||||||||||| | |||| || ||||||||||||||| ||||||| | || ||| | |||||| ||||||| |||| |||    
T  36514493 agttggggtagcacctatagtagaaaagatggtagaaactagacttaggtggtttgggcatgtagagagacgacttgtggattctgtagtatggagagta 36514394  T
Q  171 gatca 175  Q
    |||||    
T  36514393 gatca 36514389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 159
Target Start/End: Complemental strand, 36102045 - 36101964
Alignment:
Q  79 ggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttggacatgtagtgtgaagacctatggattatgta 159  Q
    |||||||||| || ||||||||||| |||||||||  ||||||||||||||  |||||| | |||||||||| |||| ||||    
T  36102045 ggtagcacctataatagaaaagatgttggaaaataggcttaggtggtttggggatgtagagagaagacctatagattttgta 36101964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 136
Target Start/End: Complemental strand, 7189512 - 7189448
Alignment:
Q  73 agttgtggtagcacctttagtagaaaagatgatggaaaataa-cttaggtggtttggacatgtag 136  Q
    ||||| ||| |||||| |||||||||||||| | |||||||| |||||||||||||| |||||||    
T  7189512 agttggggtcgcacctatagtagaaaagatggtagaaaataagcttaggtggtttgggcatgtag 7189448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 162
Target Start/End: Original strand, 42187472 - 42187556
Alignment:
Q  79 ggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttggacatgtagtgtgaagacctatggattatgtagta 162  Q
    |||||||||| || ||||||||||| |||||||||  |||||||||||||| ||||||  | |||| ||| | ||||||||||||    
T  42187472 ggtagcacctataatagaaaagatggtggaaaataggcttaggtggtttgggcatgtaaagagaaggcctgtagattatgtagta 42187556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 136
Target Start/End: Complemental strand, 26742176 - 26742118
Alignment:
Q  79 ggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttggacatgtag 136  Q
    |||||||||| |||||||||||||| |||||||||   |||||||||||| ||||||||    
T  26742176 ggtagcacctatagtagaaaagatggtggaaaataggattaggtggtttgaacatgtag 26742118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 136
Target Start/End: Original strand, 40169651 - 40169709
Alignment:
Q  79 ggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttggacatgtag 136  Q
    |||||||| | |||||||||||||| |||||||||  |||||||||||||| |||||||    
T  40169651 ggtagcacttatagtagaaaagatggtggaaaataggcttaggtggtttgggcatgtag 40169709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 134
Target Start/End: Original strand, 47848670 - 47848732
Alignment:
Q  73 agttgtggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttggacatgt 134  Q
    ||||| |||||| ||| |||||||||||||| |||||||||  |||||||||||||| |||||    
T  47848670 agttggggtagcgcctatagtagaaaagatggtggaaaataggcttaggtggtttgggcatgt 47848732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 159
Target Start/End: Original strand, 16013326 - 16013371
Alignment:
Q  114 acttaggtggtttggacatgtagtgtgaagacctatggattatgta 159  Q
    ||||||||| ||||| ||||||||| |||||||| |||||||||||    
T  16013326 acttaggtgatttgggcatgtagtgagaagacctgtggattatgta 16013371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 182
Target Start/End: Original strand, 12966025 - 12966129
Alignment:
Q  80 gtagcacctttagtagaaaagatgatggaaaataa-cttaggtggtttggacatgtagtgtgaagacctatggattatgtagt-aggagggtagatcaaa 177  Q
    ||||||||| ||| |||||||||| |||||| ||  |||||||||||||| ||||||| | |||||||  |  ||| |||||| ||||| |||||||||     
T  12966025 gtagcacctatagaagaaaagatggtggaaactatgcttaggtggtttgggcatgtagagagaagacccgtaaattctgtagtaaggagagtagatcaag 12966124  T
Q  178 tgaag 182  Q
    |||||    
T  12966125 tgaag 12966129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 136
Target Start/End: Complemental strand, 27893834 - 27893770
Alignment:
Q  73 agttgtggtagcacctttagtagaaaagatgatggaaaataa-cttaggtggtttggacatgtag 136  Q
    ||||| |||| ||||| |||||||| ||||| |||||||||  ||||||||||||| ||||||||    
T  27893834 agttgaggtaacacctatagtagaatagatggtggaaaataggcttaggtggtttgaacatgtag 27893770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 136
Target Start/End: Original strand, 38920790 - 38920854
Alignment:
Q  73 agttgtggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttggacatgtag 136  Q
    ||||| |||||||||| |||||||||||||| |||||| ||  |||| ||||||||| |||||||    
T  38920790 agttggggtagcacctatagtagaaaagatggtggaaactaggcttaagtggtttgggcatgtag 38920854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 43281676 - 43281744
Alignment:
Q  79 ggtagcacctttagtagaaaagatgatggaaaataa-cttaggtggtttggacatgtagtgtgaagacc 146  Q
    |||||||||| ||||||||||| || | |||||||  ||||| |||||||||||||||| | |||||||    
T  43281676 ggtagcacctatagtagaaaagttggtagaaaataggcttagatggtttggacatgtagagagaagacc 43281744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 146
Target Start/End: Complemental strand, 45836760 - 45836692
Alignment:
Q  79 ggtagcacctttagtagaaaagatgatggaaaataa-cttaggtggtttggacatgtagtgtgaagacc 146  Q
    |||||||||| ||||||||||| || | |||||||  ||||| |||||||||||||||| | |||||||    
T  45836760 ggtagcacctatagtagaaaagttggtagaaaataggcttagatggtttggacatgtagagagaagacc 45836692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 47236238 - 47236274
Alignment:
Q  90 tagtagaaaagatgatggaaaata-acttaggtggtt 125  Q
    |||||||||||||||||||||||| ||||||||||||    
T  47236238 tagtagaaaagatgatggaaaatagacttaggtggtt 47236274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 147
Target Start/End: Complemental strand, 44154 - 44079
Alignment:
Q  73 agttgtggtagcacctttagtagaaaagatgatggaaaata-acttaggtggtttggacatgtagtgtgaagacct 147  Q
    ||||| |||||||||| ||||||||||||||  ||||||||  |||||||||||||| ||||||| | ||||||||    
T  44154 agttggggtagcacctatagtagaaaagatggcggaaaataggcttaggtggtttgggcatgtagagagaagacct 44079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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