View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15590_low_5 (Length: 241)
Name: NF15590_low_5
Description: NF15590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15590_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 12 - 225
Target Start/End: Original strand, 44662691 - 44662904
Alignment:
| Q |
12 |
aaggtttgtaagtccaataatgttctcttcatcatgtttctcttctcttgagagcttggcattgactacaaccgttggcaacaattctgcatcaggaatg |
111 |
Q |
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| T |
44662691 |
aaggtttgtaagtccaataatgttctcttcatcatgtttctcttctcttgagagtttggcattgactacaaccgttggcaacaattctgcatcaggaatg |
44662790 |
T |
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| Q |
112 |
aacgtcattgccatgttgtttccttcttgactctccattatatccctgtaatatgcatgactaatgaatattactatatatggccagaaaaaccgaatta |
211 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
44662791 |
aaagtcattgccatgttgtttccttcttgactctccattatatccctgtaatatgcatgactaatgaatattaatatatatggccagaaaaaccgaatta |
44662890 |
T |
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| Q |
212 |
gcttactgctttgt |
225 |
Q |
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|||||||||||||| |
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| T |
44662891 |
gcttactgctttgt |
44662904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 44 - 166
Target Start/End: Complemental strand, 29339573 - 29339451
Alignment:
| Q |
44 |
catgtttctcttctcttgagagcttggcattgactacaaccgttggcaacaattctgcatcaggaatgaacgtcattgccatgttgtttccttcttgact |
143 |
Q |
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| T |
29339573 |
catgtctctcttctcctgagagtttggcattgccaacaactgttggcaacatctctgcatcaggaatgatagccattgtcatgttgcttccttctaagct |
29339474 |
T |
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| Q |
144 |
ctccattatatccctgtaatatg |
166 |
Q |
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| T |
29339473 |
ctccattatatccctgtaatatg |
29339451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 166
Target Start/End: Complemental strand, 29352735 - 29352613
Alignment:
| Q |
44 |
catgtttctcttctcttgagagcttggcattgactacaaccgttggcaacaattctgcatcaggaatgaacgtcattgccatgttgtttccttcttgact |
143 |
Q |
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||||| |||||||| |||||| |||||| || | ||||| |||||||||| |||||||||||||||| | ||||| ||||||| |||||||| || |
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| T |
29352735 |
catgtctctcttcttctgagagtttggcaatgccaacaactgttggcaacatctctgcatcaggaatgatagccattgtcatgttgcttccttctaagct |
29352636 |
T |
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| Q |
144 |
ctccattatatccctgtaatatg |
166 |
Q |
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||||| | ||||||||||||||| |
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| T |
29352635 |
ctccactgtatccctgtaatatg |
29352613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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