View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15591_high_2 (Length: 632)
Name: NF15591_high_2
Description: NF15591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15591_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 511; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 16 - 614
Target Start/End: Original strand, 40803085 - 40803670
Alignment:
| Q |
16 |
aaaggtgtttgagaggtatcataattcatctgctaaagatgaaaccaagaatttgaaccaagagggtttaatcatgcaaaatattgctaaagctagagac |
115 |
Q |
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| T |
40803085 |
aaaggtgattgagaggtatcataattcatctgctaaagatgaaaccaagaatttgaaccaagagggtttaatcatgcaaaatattgctaaagctagagac |
40803184 |
T |
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| Q |
116 |
cggctaagaaagttggaaaacaagaaacctgagaaaaagatagatctgcttatgcatgagtgcatgcaaaacaaaaatttggtggacaacctcactgctg |
215 |
Q |
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| T |
40803185 |
cggctaagaaagttggaaaacaagaaacctgagaaaaagatagatctgcttatgcatgagtgcatgcaaaacaaaaatttggtggacaacctcactgctg |
40803284 |
T |
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| Q |
216 |
aagaattgaaagatttggatgaatttattgagaagaagctgatagaggaagatgatgagattaatgcaattgaaacatgaaatcttattttataatgttt |
315 |
Q |
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| T |
40803285 |
aagaattgaaagatttggatgagtttattgagaagaagctgaaagaggaagatgataagattaatgcaattgaaacatgaaatctt-------------t |
40803371 |
T |
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| Q |
316 |
gttgtgattttgatgttattttaatcgtaatttttattgtcgctctgggagcattgtgatgcctttatcatttggtcacctaaataaatttcatggattc |
415 |
Q |
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| T |
40803372 |
gttgtgattttgatgttattttaatcgtaatttttattgtcgctctgggagcattgtgatgcctttatcatctggtcacctaaataaatttcaaggattc |
40803471 |
T |
|
| Q |
416 |
aaataaaatttgctacaaatcttgtcttcataactcttctatcaagatatcctccttgaatttgatgctttaatgtgacaaaaataagaatttatcgcaa |
515 |
Q |
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| T |
40803472 |
aaataaaatttgctaaatatcttgtcttcataactcttctatcaagatatcctccttgaatttgatactttaatgtgacaaaaataagaatttatcgcaa |
40803571 |
T |
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| Q |
516 |
tatttgtatatgatttaaaagataaaaacaactttgttctagtttccattttgttttttcaattcagaggcgtgtaactttaagaatcatgagatgttt |
614 |
Q |
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| T |
40803572 |
tatttgtatatgatttaaaagataaaaacaactttattctagtttcaattttgttttttcaattcagaggcgtgtaactttaagaatcatgagatgttt |
40803670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 323 - 414
Target Start/End: Complemental strand, 40676765 - 40676674
Alignment:
| Q |
323 |
ttttgatgttattttaatcgtaatttttattgtcgctctgggagcattgtgatgcctttatcatttggtcacctaaataaatttcatggatt |
414 |
Q |
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| T |
40676765 |
ttttgatgttatttaaattgcaattttgattgttgctctgagagcattgtgatgtctctttcattaggtcatcaaaataaaattcatggatt |
40676674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 357 - 524
Target Start/End: Original strand, 40705852 - 40706019
Alignment:
| Q |
357 |
gctctgggagcattgtgatgcctttatcatttggtcacctaaataaatttcatggattcaaataaaatttgctacaaatcttgtcttcataactcttcta |
456 |
Q |
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| T |
40705852 |
gctctgagagcattgtgatgcatctatcattaggtcatctaaataaaattcatggacttcaattatatgtgttataaaccttgtctttgaaattcttcca |
40705951 |
T |
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| Q |
457 |
tcaagatatcctccttgaatttgatgctttaatgtgacaaaaataagaatttatcgcaatatttgtat |
524 |
Q |
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| T |
40705952 |
taaagatatcctccttgaatttggtacttcaaagttataagagtaagaatttattgcaacattagtat |
40706019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 37921015 - 37920960
Alignment:
| Q |
24 |
ttgagaggtatcataattcatctgctaaagatgaaaccaagaatttgaaccaagag |
79 |
Q |
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| T |
37921015 |
ttgagaggtatcaaaattcatcggtgaaagatgaaacaaagaatgtgaaccaagag |
37920960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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