View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15591_high_3 (Length: 266)
Name: NF15591_high_3
Description: NF15591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15591_high_3 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 266
Target Start/End: Original strand, 27377328 - 27377575
Alignment:
| Q |
19 |
acttgtgatgcacaaatcaatcctaattttatcacaggaattgcttcttcagctgcaaaattacccaaaagtctttcatcaacacaatgctcgacatttc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
27377328 |
acttgtgatgcacaaatcaatcctaattttatcacaggaattgcttcttcagctgcaaaattacctaaaagtctttcatcaacacaatgctcgacatttc |
27377427 |
T |
|
| Q |
119 |
cttcttctagtgcacccctcaccatgtcacaaagaaccaccacatcatcctccatgtattccacaggtctttttcctgtcactatctccaaaatcaggat |
218 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27377428 |
cttcttctaatgatcccctcaccatgtcacaaagaaccaccacatcatcctccatgtattccacaggtctttttcctgtcactatctccaaaatcaggat |
27377527 |
T |
|
| Q |
219 |
cccgaaaccgtaaacgtcgcatttctcggttattttaactgtgcggca |
266 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
27377528 |
cccgaaaccgtacacgtcgcatttctcggttattttaactgtgcggca |
27377575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 135 - 266
Target Start/End: Complemental strand, 9682315 - 9682184
Alignment:
| Q |
135 |
cctcaccatgtcacaaagaaccaccacatcatcctccatgtattccacaggtctttttcctgtcactatctccaaaatcaggatcccgaaaccgtaaacg |
234 |
Q |
| |
|
||||||||||||||| ||||| | |||||||||||||| |||||||||||||||||||| |||| || || | || || || || ||||| || | | |
|
|
| T |
9682315 |
cctcaccatgtcacatagaacaataacatcatcctccatatattccacaggtctttttccactcacaatttcaagaaccaatattccaaaaccatatatg |
9682216 |
T |
|
| Q |
235 |
tcgcatttctcggttattttaactgtgcggca |
266 |
Q |
| |
|
|||||||| |||||||| ||||| |||||||| |
|
|
| T |
9682215 |
tcgcatttttcggttatgttaaccgtgcggca |
9682184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 260
Target Start/End: Complemental strand, 42919700 - 42919579
Alignment:
| Q |
139 |
accatgtcacaaagaaccaccacatcatcctccatgtattccacaggtctttttcctgtcactatctccaaaatcaggatcccgaaaccgtaaacgtcgc |
238 |
Q |
| |
|
|||||||||||||| || ||||||||||| ||||| || || ||||| || || |||||||| ||||||||| || || ||||| || ||||| |||| |
|
|
| T |
42919700 |
accatgtcacaaagcacaaccacatcatcttccatatactctacaggcctcttccctgtcacagtctccaaaaccaagactccgaacccataaacatcgc |
42919601 |
T |
|
| Q |
239 |
atttctcggttattttaactgt |
260 |
Q |
| |
|
|||| ||||| ||||| ||||| |
|
|
| T |
42919600 |
atttttcggtaattttcactgt |
42919579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University