View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15591_high_6 (Length: 236)
Name: NF15591_high_6
Description: NF15591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15591_high_6 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 33223597 - 33223383
Alignment:
| Q |
16 |
acaacaactcttaatataagctagcaag---gccatgcaaactcataatatcactcagacatttaggtttttgccaatcccttatggccttattcttttc |
112 |
Q |
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|||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33223597 |
acaaaaactctta-tataagctagcaagctggccatgcaaactcataatatcactcagacatttaggtttttgccaatcccttatggccttattcttttc |
33223499 |
T |
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| Q |
113 |
ttcatctaccattacaccttgtgcacttgcaccaaatcctaagaaagtaacctcgctttnnnnnnnnnnnnnnnnntctctaaatatgttttaatggcat |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33223498 |
ttcatctaccattacaccttgtgcacttgcaccaaatcctaagaaagtaacctcgcttt-------aaaaaaaaaatctctaaatatgttttaatggcat |
33223406 |
T |
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| Q |
213 |
actaactacattttaactaggtac |
236 |
Q |
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|||||||||| ||||||||||||| |
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| T |
33223405 |
actaactaca-tttaactaggtac |
33223383 |
T |
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