View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15591_high_7 (Length: 235)

Name: NF15591_high_7
Description: NF15591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15591_high_7
NF15591_high_7
[»] chr6 (13 HSPs)
chr6 (1-221)||(2951927-2952147)
chr6 (1-221)||(3003648-3003868)
chr6 (1-205)||(2964513-2964723)
chr6 (1-221)||(2927145-2927374)
chr6 (1-166)||(2937503-2937674)
chr6 (1-219)||(2934589-2934813)
chr6 (1-191)||(2982881-2983077)
chr6 (1-205)||(2658855-2659065)
chr6 (3-192)||(2974024-2974219)
chr6 (84-192)||(2997341-2997449)
chr6 (1-62)||(2929462-2929523)
chr6 (4-66)||(2997240-2997302)
chr6 (3-54)||(2978408-2978458)
[»] chr3 (3 HSPs)
chr3 (3-197)||(49613454-49613648)
chr3 (100-191)||(49618436-49618527)
chr3 (9-50)||(49618589-49618630)
[»] scaffold0024 (2 HSPs)
scaffold0024 (13-152)||(35118-35263)
scaffold0024 (9-54)||(45123-45168)
[»] chr7 (2 HSPs)
chr7 (3-53)||(3339187-3339237)
chr7 (100-136)||(3339092-3339128)


Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 2952147 - 2951927
Alignment:
Q  1 ttactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgttttatccattctacaactctactcggccgactat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  2952147 ttactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgttttatccattctacaactctactcggccgacttt 2952048  T
Q  101 caataggatgttgcaaatgaaatatcctaatcagatcagtgaagtggcttatactaatatcaccattatcaaaatccaaatttgatttattgtaataatt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||      
T  2952047 caataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcacccttatcaaaatccaattttgatttattgtaataacc 2951948  T
Q  201 aaaattacaaatagtgagttt 221  Q
    ||||| |  ||||||||||||    
T  2951947 aaaataatgaatagtgagttt 2951927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 3003648 - 3003868
Alignment:
Q  1 ttactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgttttatccattctacaactctactcggccgactat 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||   ||||||||||||||||| |    
T  3003648 ttactttcagtgttcactttaaatctaactccagcttctaacaactcagttgcactcggtggatgtttcatccattctctgactctactcggccgacttt 3003747  T
Q  101 caataggatgttgcaaatgaaatatcctaatcagatcagtgaagtggcttatactaatatcaccattatcaaaatccaaatttgatttattgtaataatt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||      
T  3003748 caataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgacttatactaatatcacccttatcaaaatccaattttgatttattgtaataacc 3003847  T
Q  201 aaaattacaaatagtgagttt 221  Q
    ||||| |  ||||||||||||    
T  3003848 aaaataatgaatagtgagttt 3003868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 2964723 - 2964513
Alignment:
Q  1 ttactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgttttatccattctacaa------ctctactcggcc 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||  ||     |      ||||||||||||    
T  2964723 ttactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactaggtagatgtattatctgtttgttgatgttgtctctactcggcc 2964624  T
Q  95 gactatcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtggcttatactaatatcaccattatcaaaatccaaatttgatttattgta 194  Q
    || | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||    
T  2964623 gattttcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcacccttatcaaaatccaattttgatttattgta 2964524  T
Q  195 ataattaaaat 205  Q
    ||||| |||||    
T  2964523 ataatcaaaat 2964513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 2927374 - 2927145
Alignment:
Q  1 ttactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgttttatccattcta--caa-------ctctactcg 91  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||  ||        |||||||||    
T  2927374 ttactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgttttatcatccctaggcagacccggtctctactcg 2927275  T
Q  92 gccgactatcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtggcttatactaatatcaccattatcaaaatccaaatttgatttatt 191  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||| |||||||||| ||| |||||||||||    
T  2927274 gccgactttcaataggatgttgcaaatgaaatatccgaatcagatcagtgaagtgccttataataatatcacccttatcaaaattcaattttgatttatt 2927175  T
Q  192 gtaataattaaaattacaaatagtgagttt 221  Q
    |||||||  ||||| |  ||||||||||||    
T  2927174 gtaataaccaaaataatgaatagtgagttt 2927145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 2937674 - 2937503
Alignment:
Q  1 ttactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgttttatccattctacaa------ctctactcggcc 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||  | |      ||||||||||||    
T  2937674 ttactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgtattatctgttcgtcgatcgcttctctactcggcc 2937575  T
Q  95 gactatcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtggcttatactaatatcaccat 166  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2937574 gactttcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgacttatactaatatcaccat 2937503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 2934813 - 2934589
Alignment:
Q  1 ttactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgttttatccattctacaa------ctctactcggcc 94  Q
    ||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||  ||||||  | |  ||  |||  | |      ||||||||||||    
T  2934813 ttacttttagtattcactttaaacctaactccagcttctaacaattcagttgcaccgggtagacttatcttctgttcgtcgaacatgtctctactcggcc 2934714  T
Q  95 gactatcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtggcttatactaatatcaccattatcaaaatccaaatttgatttattgta 194  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||    
T  2934713 gactttcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcacccttatcaaaatccaattttgatttattgta 2934614  T
Q  195 ataattaaaattacaaatagtgagt 219  Q
    ||||  ||||| |  ||||||||||    
T  2934613 ataaccaaaataatgaatagtgagt 2934589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 2983077 - 2982881
Alignment:
Q  1 ttactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgttttatccattctacaa------ctctactcggcc 94  Q
    ||||||| ||| ||||||| |||||||||||||||||||| ||||| ||||||| || ||| |||| |||||| || | | |      ||||||||||||    
T  2983077 ttacttttagttttcacttgaaacctaactccagcttctaccaactgagttgcagtctgtatatgtattatccgtttttcgatcttgactctactcggcc 2982978  T
Q  95 gactatcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtggcttatactaatatcaccattatcaaaatccaaatttgatttatt 191  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||| |||||||||||    
T  2982977 gactttcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcaccattatcaaaagacaattttgatttatt 2982881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 2658855 - 2659065
Alignment:
Q  1 ttactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgttttatccattctacaa-ctc-----tactcggcc 94  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||  |   | |     ||||||| |    
T  2658855 ttacttttagtgctcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgtatcatccgttcgtcggtcgcgttattactcggtc 2658954  T
Q  95 gactatcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtggcttatactaatatcaccattatcaaaatccaaatttgatttattgta 194  Q
    || | ||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||  ||| |||||||||||| |    
T  2658955 gaatttcaataggaagttgcaaatgaaatatcctaatcagatcagtgaagtgcattatactaatatcaccattatcaaaaaacaagtttgatttattgga 2659054  T
Q  195 ataattaaaat 205  Q
    | ||| |||||    
T  2659055 agaataaaaat 2659065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 3 - 192
Target Start/End: Complemental strand, 2974219 - 2974024
Alignment:
Q  3 actttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgttttatccattctacaa------ctctactcggccga 96  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||   |||  | |      |||||||||||| |    
T  2974219 acttttagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgtattatttgttcatcgatctgctctctactcggccta 2974120  T
Q  97 ctatcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtggcttatactaatatcaccattatcaaaatccaaatttgatttattg 192  Q
    || ||||||||||||| ||||||||||||||||||||||||| |||||||  ||||||||||||||   ||||||||| |||| |||| |||||||    
T  2974119 ctttcaataggatgtttcaaatgaaatatcctaatcagatcattgaagtgcattatactaatatcattgttatcaaaacccaattttggtttattg 2974024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 84 - 192
Target Start/End: Original strand, 2997341 - 2997449
Alignment:
Q  84 tctactcggccgactatcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtggcttatactaatatcaccattatcaaaatccaaattt 183  Q
    ||||| ||||||| | ||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||  ||| |||    
T  2997341 tctacccggccgattttcaaagggatgttgcaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcaccatcatcaaaaaacaagttt 2997440  T
Q  184 gatttattg 192  Q
    |||||||||    
T  2997441 gatttattg 2997449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 2929523 - 2929462
Alignment:
Q  1 ttactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtag 62  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2929523 ttacttttagtgttcactttaaacctaactccagcttctaacaactcagttgcactccgtag 2929462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 2997240 - 2997302
Alignment:
Q  4 ctttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgt 66  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  2997240 cttttagtgttcactttaaacttaactccagcttctaacaactcagttgcacttggtagatgt 2997302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 2978458 - 2978408
Alignment:
Q  3 actttcagtgttcactttaaacctaactccagcttctaacaactcagttgca 54  Q
    ||||| |||||||||||||||||||| ||||||||||||||| |||||||||    
T  2978458 acttttagtgttcactttaaacctaa-tccagcttctaacaattcagttgca 2978408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 3 - 197
Target Start/End: Complemental strand, 49613648 - 49613454
Alignment:
Q  3 actttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgttttatccattctacaactctactcggccgactatca 102  Q
    ||||| |||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||| ||   |||  ||| ||||  |||||| || |      
T  49613648 acttttagtgttcactttaaacctcaccccagcttctaacaactcagttgcactctgtagatgtttcattggttcatcaattctaagcggccgtctttgc 49613549  T
Q  103 ataggatgttgcaaatgaaatatcctaatcagatcagtgaagtggcttatactaatatcaccattatcaaaatccaaatttgatttattgtaata 197  Q
    | |||||||||||  || || ||||||||||||||||||||||| |||||||||| ||| |||||||||||| |||| ||||||| |||||||||    
T  49613548 aaaggatgttgcaggtggaaaatcctaatcagatcagtgaagtgccttatactaaaatcgccattatcaaaacccaagtttgattgattgtaata 49613454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 100 - 191
Target Start/End: Complemental strand, 49618527 - 49618436
Alignment:
Q  100 tcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtggcttatactaatatcaccattatcaaaatccaaatttgatttatt 191  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||| |||||||||||    
T  49618527 tcaataggatgttccaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcaccgtcatcaaaatccaattttgatttatt 49618436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 49618630 - 49618589
Alignment:
Q  9 agtgttcactttaaacctaactccagcttctaacaactcagt 50  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  49618630 agtgttcactttaaacctaactccagcttctaacaactcagt 49618589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 152
Target Start/End: Original strand, 35118 - 35263
Alignment:
Q  13 ttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgttttatccattctacaa------ctctactcggccgactatcaatag 106  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||  |||  | |      ||||||| ||| |||| |||||||    
T  35118 ttcacttgaaacctaactccagcttctaacaactgagttgcactcggtagatgtattatctgttcgtcgatcttgtctctacttggctgactttcaatag 35217  T
Q  107 gatgttgcaaatgaaatatcctaatcagatcagtgaagtggcttat 152  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  35218 gatgttgcaaatgaaatatcctaatcagatcagtgaagtgccttat 35263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 45123 - 45168
Alignment:
Q  9 agtgttcactttaaacctaactccagcttctaacaactcagttgca 54  Q
    |||| |||||| |||||||||||||||||||||||||||| |||||    
T  45123 agtggtcacttgaaacctaactccagcttctaacaactcatttgca 45168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 3339237 - 3339187
Alignment:
Q  3 actttcagtgttcactttaaacctaactccagcttctaacaactcagttgc 53  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  3339237 acttttagtgttcactttaaacctaactcctgcttctaacaactcagttgc 3339187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 100 - 136
Target Start/End: Complemental strand, 3339128 - 3339092
Alignment:
Q  100 tcaataggatgttgcaaatgaaatatcctaatcagat 136  Q
    |||||||||||||||||||||||||||||||||||||    
T  3339128 tcaataggatgttgcaaatgaaatatcctaatcagat 3339092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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