View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15591_high_8 (Length: 225)

Name: NF15591_high_8
Description: NF15591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15591_high_8
NF15591_high_8
[»] chr6 (15 HSPs)
chr6 (1-225)||(2952131-2952355)
chr6 (5-225)||(2927358-2927578)
chr6 (8-225)||(3003447-3003664)
chr6 (13-225)||(2937658-2937870)
chr6 (9-225)||(2964707-2964923)
chr6 (12-225)||(2974205-2974418)
chr6 (11-225)||(2997039-2997253)
chr6 (12-225)||(2934797-2935010)
chr6 (9-225)||(2983061-2983280)
chr6 (12-225)||(2658652-2658871)
chr6 (33-225)||(2929507-2929699)
chr6 (12-122)||(2979192-2979299)
chr6 (119-225)||(2978444-2978550)
chr6 (157-215)||(2954549-2954607)
chr6 (9-63)||(2985688-2985742)
[»] chr7 (1 HSPs)
chr7 (8-225)||(3339223-3339440)
[»] scaffold0024 (2 HSPs)
scaffold0024 (12-215)||(34909-35112)
scaffold0024 (12-215)||(44598-44801)
[»] chr3 (2 HSPs)
chr3 (9-225)||(49613634-49613850)
chr3 (8-225)||(49618622-49618827)


Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 2952355 - 2952131
Alignment:
Q  1 tatatccctctgaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcagcaatatatgtctcctcagggtaatga 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2952355 tatatccctccgaacaagtatatccacatcggtaccagtatttataatgtaatccaaaacaacaacataatcagcaatatatgactcctcagggtaatga 2952256  T
Q  101 cactgctccaaagcaaccatattccgaaataaagtttcggtcgaatcctgaacaaataattgaggaatttcaagaactcctcccgaaaacctcaagtcaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||   ||||||||||||||||||||||||| ||||||||||||||||||    
T  2952255 cactgctccaaagcaaccatattccgaaataaagtttcggttgaatcctgaacttttaattgaggaatttcaagaactccttccgaaaacctcaagtcaa 2952156  T
Q  201 gtaaacacttactttcagtgttcac 225  Q
    |||||||||||||||||||||||||    
T  2952155 gtaaacacttactttcagtgttcac 2952131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 5 - 225
Target Start/End: Complemental strand, 2927578 - 2927358
Alignment:
Q  5 tccctctgaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcagcaatatatgtctcctcagggtaatgacact 104  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||  |  |||||||| ||||||||  || ||||||||||||||||    
T  2927578 tccctctgaacaagtatatccacatccttaccagtatttataaggtaatccaaaacagaacgataatcagtaatatatgaatcatcagggtaatgacact 2927479  T
Q  105 gctccaaagcaaccatattccgaaataaagtttcggtcgaatcctgaacaaataattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaa 204  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2927478 gctccaaagcaaccatattccgtaataaagtttcagtcgaatcctgaacttttaattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaa 2927379  T
Q  205 acacttactttcagtgttcac 225  Q
    |||||||||||||||||||||    
T  2927378 acacttactttcagtgttcac 2927358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 8 - 225
Target Start/End: Original strand, 3003447 - 3003664
Alignment:
Q  8 ctctgaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcagcaatatatgtctcctcagggtaatgacactgct 107  Q
    |||||||||||||||||||||||  || ||||||||||||||||||||||||||  |  |||||| | ||||||||  || |||||||||||||||||||    
T  3003447 ctctgaacaagtatatccacatccttagcagtatttataaggtaatccaaaacagaacgataatcggtaatatatgaatcatcagggtaatgacactgct 3003546  T
Q  108 ccaaagcaaccatattccgaaataaagtttcggtcgaatcctgaacaaataattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaaca 207  Q
    |||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3003547 ccaaagcaaccatattccgaaataaagtttcggtcgaatccgcaactaataattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaaca 3003646  T
Q  208 cttactttcagtgttcac 225  Q
    ||||||||||||||||||    
T  3003647 cttactttcagtgttcac 3003664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 13 - 225
Target Start/End: Complemental strand, 2937870 - 2937658
Alignment:
Q  13 aacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcagcaatatatgtctcctcagggtaatgacactgctccaaa 112  Q
    |||||||||| || ||||  |||| |||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||    
T  2937870 aacaagtatacccgcatccttaccggtatttataaggtaatccaaaacaacaacataatcagcaatatatgactcatgagggtaatgacactgctccaaa 2937771  T
Q  113 gcaaccatattccgaaataaagtttcggtcgaatcctgaacaaataattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacacttac 212  Q
    ||||||||||||| ||| ||| ||||||||||||||| |||   ||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||    
T  2937770 gcaaccatattccaaaacaaaatttcggtcgaatcctcaactgttaattgaggaatttcaagaactcctcctgaaaatctcaagtcaagtaaacaattac 2937671  T
Q  213 tttcagtgttcac 225  Q
    |||||||||||||    
T  2937670 tttcagtgttcac 2937658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 9 - 225
Target Start/End: Complemental strand, 2964923 - 2964707
Alignment:
Q  9 tctgaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcagcaatatatgtctcctcagggtaatgacactgctc 108  Q
    ||||||||||||||||||||||  | ||||||||||||||||||||||||||| ||||||| |||| |||||||| ||| | ||||||| ||||||||||    
T  2964923 tctgaacaagtatatccacatccttgccagtatttataaggtaatccaaaacagcaacatagtcagtaatatatgactcataagggtaacgacactgctc 2964824  T
Q  109 caaagcaaccatattccgaaataaagtttcggtcgaatcctgaacaaataattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacac 208  Q
    ||||||||||||||||||||| | | ||||||||  ||| ||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2964823 caaagcaaccatattccgaaacataatttcggtcccatcgtgagctattaattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacac 2964724  T
Q  209 ttactttcagtgttcac 225  Q
    |||||||||||||||||    
T  2964723 ttactttcagtgttcac 2964707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 12 - 225
Target Start/End: Complemental strand, 2974418 - 2974205
Alignment:
Q  12 gaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcagcaatatatgtctcctcagggtaatgacactgctccaa 111  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||| || |  |||||||  |||||||| ||  | |||||||||||||||||||||    
T  2974418 gaacaagtatatccacatccgtactagtatttataaggtaatccaaaataaaatgataatcaataatatatgactgataagggtaatgacactgctccaa 2974319  T
Q  112 agcaaccatattccgaaataaagtttcggtcgaatcctgaacaaataattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacactta 211  Q
    |||||||||||||||||| ||| ||||||||  ||| |||||   ||||||||||||||||||||||||||||||||||||||||||| ||||||| | |    
T  2974318 agcaaccatattccgaaacaaaatttcggtcccatcttgaactgttaattgaggaatttcaagaactcctcccgaaaacctcaagtcatgtaaacattca 2974219  T
Q  212 ctttcagtgttcac 225  Q
    |||| |||||||||    
T  2974218 cttttagtgttcac 2974205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 11 - 225
Target Start/End: Original strand, 2997039 - 2997253
Alignment:
Q  11 tgaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcagcaatatatgtctcctcagggtaatgacactgctcca 110  Q
    |||||||||||||| |||||  ||||||| |||||||||||||||||||||  ||||||||||| |||||||  ||  | || ||||||| |||||||||    
T  2997039 tgaacaagtatatcaacatccttaccagtgtttataaggtaatccaaaacagaaacataatcagtaatatataacttgttagtgtaatgaaactgctcca 2997138  T
Q  111 aagcaaccatattccgaaataaagtttcggtcgaatcctgaacaaataattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacactt 210  Q
    |||||||||||||||||||||||| |||||||  ||||| ||||| |||   |||||||||||||||| |||||||||||||||||||||||||||||||    
T  2997139 aagcaaccatattccgaaataaagcttcggtccgatcctcaacaattaacgaaggaatttcaagaacttctcccgaaaacctcaagtcaagtaaacactt 2997238  T
Q  211 actttcagtgttcac 225  Q
     |||| |||||||||    
T  2997239 gcttttagtgttcac 2997253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 12 - 225
Target Start/End: Complemental strand, 2935010 - 2934797
Alignment:
Q  12 gaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcagcaatatatgtctcctcagggtaatgacactgctccaa 111  Q
    |||||||||||||  |||| |||||||||||||||||||||||||  ||| ||||||||||||  |||||||  || |||||||||||||||||||||||    
T  2935010 gaacaagtatatcagcatccgtaccagtatttataaggtaatccatgacagcaacataatcagtgatatatgaatcatcagggtaatgacactgctccaa 2934911  T
Q  112 agcaaccatattccgaaataaagtttcggtcgaatcctgaacaaataattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacactta 211  Q
    |||||||||||| |||||  || |||| |||  ||| | |||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2934910 agcaaccatatttcgaaacgaaatttcagtcctatcgtcaaccgttaattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacactta 2934811  T
Q  212 ctttcagtgttcac 225  Q
    |||| ||| |||||    
T  2934810 cttttagtattcac 2934797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 9 - 225
Target Start/End: Complemental strand, 2983280 - 2983061
Alignment:
Q  9 tctgaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcagcaatatatgtctcctcagggtaatgacactgctc 108  Q
    |||||| ||||| |||||||||  ||||| |||||||||||||||||||||||| ||||||||||  |||||||| ||| | |||||||||||| |||||    
T  2983280 tctgaataagtacatccacatccttaccattatttataaggtaatccaaaacaagaacataatcaagaatatatgactcatgagggtaatgacaatgctc 2983181  T
Q  109 caaagcaaccatattccgaaataaagtttcggtcg---aatcctgaacaaataattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaa 205  Q
    |||||||| |||||||||||| ||| |||||||||    ||| ||||| | |||||||||||||||||||||||||||||||||||||||||||  ||||    
T  2983180 caaagcaatcatattccgaaacaaaatttcggtcgtccgatcatgaactattaattgaggaatttcaagaactcctcccgaaaacctcaagtcatataaa 2983081  T
Q  206 cacttactttcagtgttcac 225  Q
    |||||||||| ||| |||||    
T  2983080 cacttacttttagttttcac 2983061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 12 - 225
Target Start/End: Original strand, 2658652 - 2658871
Alignment:
Q  12 gaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcagcaatatatgtctcctcagggtaatgacactgctccaa 111  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||| |||||||| ||| | |||||||||||| ||||||||    
T  2658652 gaacaagtatatccacatccttaccagtatttataaggtaatccaaaacagcaacataatcagtaatatatgactcataagggtaatgacattgctccaa 2658751  T
Q  112 agcaaccatattccgaaataaagtttcggtcgaatcctgaacaaataattgaggaatttcaagaactcctcc------cgaaaacctcaagtcaagtaaa 205  Q
    |||||||||||| ||||| ||| |||| |||  ||| | |||   |||||||||||||||||||||||||||       |||||||||||||||||||||    
T  2658752 agcaaccatatttcgaaacaaaatttcagtcctatcgtcaaccgttaattgaggaatttcaagaactcctcctgattttgaaaacctcaagtcaagtaaa 2658851  T
Q  206 cacttactttcagtgttcac 225  Q
    |||||||||| |||| ||||    
T  2658852 cacttacttttagtgctcac 2658871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 33 - 225
Target Start/End: Complemental strand, 2929699 - 2929507
Alignment:
Q  33 taccagtatttataaggtaatccaaaacaacaacataatcagcaatatatgtctcctcagggtaatgacactgctccaaagcaaccatattccgaaataa 132  Q
    ||||||||||||||||  |||||| || |  ||||||||||  |||||||| ||| | |||||||||| ||||||||||||||| |||||||| ||||||    
T  2929699 taccagtatttataagaaaatccataatagtaacataatcaagaatatatgactcatgagggtaatgaaactgctccaaagcaatcatattccaaaataa 2929600  T
Q  133 agtttcggtcgaatcctgaacaaataattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacacttactttcagtgttcac 225  Q
    ||||||||||  |||   |||   ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||    
T  2929599 agtttcggtcccatctgcaactgttaattgaggaatttcaagaactcctcctgaaaaccttaagtcaagtaaacacttacttttagtgttcac 2929507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 12 - 122
Target Start/End: Complemental strand, 2979299 - 2979192
Alignment:
Q  12 gaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcagcaatatatgtctcctcagggtaatgacactgctccaa 111  Q
    ||||||||||||||||||| ||||| ||||||||||||||||| || ||||||   ||||||| |||||||| ||| | |||||||| ||||||||||||    
T  2979299 gaacaagtatatccacatccgtaccggtatttataaggtaatcgaagacaaca---taatcagtaatatatgactcatgagggtaataacactgctccaa 2979203  T
Q  112 agcaaccatat 122  Q
    |||||||||||    
T  2979202 agcaaccatat 2979192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 119 - 225
Target Start/End: Complemental strand, 2978550 - 2978444
Alignment:
Q  119 atattccgaaataaagtttcggtcgaatcctgaacaaataattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacacttactttcag 218  Q
    |||| |||||| ||| ||||||||  ||||| |||   ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||    
T  2978550 atataccgaaacaaaatttcggtcccatcctcaactcttaattgaggaatttcaagaactcctcccgaaaacctcaaatcaagtaaacactcacttttag 2978451  T
Q  219 tgttcac 225  Q
    |||||||    
T  2978450 tgttcac 2978444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 2954607 - 2954549
Alignment:
Q  157 taattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacacttacttt 215  Q
    ||||||||||||| ||||||||| |   ||||||||||||||||||||||||| |||||    
T  2954607 taattgaggaattccaagaactcgttgtgaaaacctcaagtcaagtaaacactcacttt 2954549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 2985742 - 2985688
Alignment:
Q  9 tctgaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaac 63  Q
    ||||||||||||||||| ||||  ||| |||||||||||||||||||||| ||||    
T  2985742 tctgaacaagtatatccgcatccttactagtatttataaggtaatccaaagcaac 2985688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 8 - 225
Target Start/End: Complemental strand, 3339440 - 3339223
Alignment:
Q  8 ctctgaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcagcaatatatgtctcctcagggtaatgacactgct 107  Q
    |||| ||||||||||||||||||  ||| ||||||||||||| ||||||||| | |||||||||||  |||||||| ||| |||||||||||||||||||    
T  3339440 ctcttaacaagtatatccacatccatactagtatttataaggaaatccaaaaaagcaacataatcaataatatatgactcatcagggtaatgacactgct 3339341  T
Q  108 ccaaagcaaccatattccgaaataaagtttcggtcgaatcctgaacaaataattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaaca 207  Q
    |||||||||||||||||||||| ||| ||||||||  ||| | |||   |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3339340 ccaaagcaaccatattccgaaacaaaatttcggtcccatcgtcaactgttaattgaggaatttcaagaactcctcccgaaaacctcaagccaagtaaaca 3339241  T
Q  208 cttactttcagtgttcac 225  Q
    || ||||| |||||||||    
T  3339240 ctcacttttagtgttcac 3339223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 120; Significance: 1e-61; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 12 - 215
Target Start/End: Original strand, 34909 - 35112
Alignment:
Q  12 gaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcagcaatatatgtctcctcagggtaatgacactgctccaa 111  Q
    |||||||||||||| ||||  ||||||||||||||||| |||||||||||||||||||||||| |||||||| ||| | |||||||||||||||||||||    
T  34909 gaacaagtatatccgcatccttaccagtatttataaggaaatccaaaacaacaacataatcagtaatatatgactcataagggtaatgacactgctccaa 35008  T
Q  112 agcaaccatattccgaaataaagtttcggtcgaatcctgaacaaataattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacactta 211  Q
    |||||||||||||||||| ||| ||||||||  ||||| |||   |||| ||||||||||||| |||||| ||||||||| ||||||||||||||||| |    
T  35009 agcaaccatattccgaaacaaaatttcggtcccatcctcaacttctaatcgaggaatttcaagcactccttccgaaaaccccaagtcaagtaaacactca 35108  T
Q  212 cttt 215  Q
    ||||    
T  35109 cttt 35112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 12 - 215
Target Start/End: Original strand, 44598 - 44801
Alignment:
Q  12 gaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcagcaatatatgtctcctcagggtaatgacactgctccaa 111  Q
    ||||| |||||||  ||||  ||||||||||||||||||||||||||| | ||||||||| |  ||||||||  || | |||||||||| ||| |||||     
T  44598 gaacatgtatatctgcatccttaccagtatttataaggtaatccaaaatagcaacataattaataatatatgattcattagggtaatgatactactccat 44697  T
Q  112 agcaaccatattccgaaataaagtttc-ggtcgaatcctgaacaaataattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacactt 210  Q
    |||||||||||| | ||| ||| |||| ||| | ||| | | |   ||||||||||||||||||||||| | | ||||||||||| |||||||||||||     
T  44698 agcaaccatatttcaaaacaaaatttcaggttg-atcatcagctcttaattgaggaatttcaagaactctttctgaaaacctcaaatcaagtaaacactc 44796  T
Q  211 acttt 215  Q
    |||||    
T  44797 acttt 44801  T

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Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 9 - 225
Target Start/End: Complemental strand, 49613850 - 49613634
Alignment:
Q  9 tctgaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcagcaatatatgtctcctcagggtaatgacactgctc 108  Q
    ||||||||||||||||||||||  | |||||||| |||||| ||||||||||| |||||||||| | ||| || | |||   |||||| ||||| |||||    
T  49613850 tctgaacaagtatatccacatccttgccagtattaataaggaaatccaaaacagcaacataatccgtaatgtaggactcactagggtagtgacattgctc 49613751  T
Q  109 caaagcaaccatattccgaaataaagtttcggtcgaatcctgaacaaataattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacac 208  Q
    ||||||||||||||||||||| ||| |||| ||| |||||| |||    |||||||||||||||||||| | ||| ||||||||||| ||||||||||||    
T  49613750 caaagcaaccatattccgaaacaaaatttcagtccaatcctcaactttcaattgaggaatttcaagaacccgtcctgaaaacctcaaatcaagtaaacac 49613651  T
Q  209 ttactttcagtgttcac 225  Q
    | ||||| |||||||||    
T  49613650 tcacttttagtgttcac 49613634  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 225
Target Start/End: Complemental strand, 49618827 - 49618622
Alignment:
Q  8 ctctgaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcagcaatatatgtctcctcagggtaatgacactgct 107  Q
    |||||||||||||||||| ||||  ||||  |||||||||||||||||||||||  || |||||||  |||||| |  || | ||||||||||           
T  49618827 ctctgaacaagtatatccgcatccctaccgatatttataaggtaatccaaaacagaaatataatcataaatataggaatcatgagggtaatga------- 49618735  T
Q  108 ccaaagcaaccatattccgaaataaagtttcggtcgaatcctgaacaaataattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaaca 207  Q
        |||||||||||||| |||||||||| |||||   |||| |||   ||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  49618734 ----agcaaccatattcc-aaataaagttacggtccggtcctcaactcttaattgaggaatttcaagaactcgtccggaaaacctcaagtcaagtaaaca 49618640  T
Q  208 cttactttcagtgttcac 225  Q
      || ||| |||||||||    
T  49618639 tgtagttttagtgttcac 49618622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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