View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15591_low_3 (Length: 598)
Name: NF15591_low_3
Description: NF15591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15591_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 146 - 427
Target Start/End: Original strand, 48569141 - 48569421
Alignment:
| Q |
146 |
gaaatcttgcagtgtgctgagtctgcattgaaatcagtcataggagatctctccaatacctattttgttggaaatgctccaatggcccatatggttgttc |
245 |
Q |
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| T |
48569141 |
gaaatcttgcagtgtgctgagtctgcattgaaatcagtcataggagatctctccaatacctttttggttggaaatgctccaatggcccatatggttgttc |
48569240 |
T |
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| Q |
246 |
agcctaatgaagaccattcaggatcctcatcttttaaggtatattcatggaaaattatggtactttggtctactcttggaaggttgacatcttct-gaaa |
344 |
Q |
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| T |
48569241 |
agcctaatgaagaccattcaggatcctcatcttttaaggtatattcatagaaaattatggtactttggtctactcttggaaggttgacatcttctggaaa |
48569340 |
T |
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| Q |
345 |
taccttcaaggcatttcctttctttggttgtaccacagcctttccaatacttctgttttctgtgtgaaaattgattatgaatt |
427 |
Q |
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| T |
48569341 |
taccttcaaggcatttcctttctttggttgtaccacagcctttccaatacttctgttttc--tgtgaaaattgattatgaatt |
48569421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 452 - 583
Target Start/End: Original strand, 48569420 - 48569545
Alignment:
| Q |
452 |
ttcctttgctgaaatcttccgatagaaattcttcgtcatgatcaagtcccaagtaattgctaaaaacaagtttgactttagaaaatgcgaggattttgtt |
551 |
Q |
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| T |
48569420 |
ttcctttgctgaaatcttccgatataaattcttcttca------agtcccaagtaattgctaaaaacaagtttgactttagaaaatgcgaggattttgtt |
48569513 |
T |
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| Q |
552 |
tgggtgacagaggatgaattgatggagtattt |
583 |
Q |
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| T |
48569514 |
tgggtgacaaaggatgaattgatggagtattt |
48569545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 48569018 - 48569090
Alignment:
| Q |
15 |
aacctgtgtggcattttccagagaaaccttatgaatcagaggaaaccatgcgtaaggtaaacattcattgtgg |
87 |
Q |
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| T |
48569018 |
aacctgtgtggcattttccagagaaaccttatgaatcagaggaaaccatgcgtaaggtgaacattcattgtgg |
48569090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 1e-33; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 152 - 338
Target Start/End: Complemental strand, 10821937 - 10821749
Alignment:
| Q |
152 |
ttgcagtgtgctgagtctgcattgaaatcagtcataggagatctctccaatacctattttgttggaaatgctccaatggcccatatggttgttcagccta |
251 |
Q |
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| T |
10821937 |
ttgcagtgtgcagaatctgccttgaaatcagtcttaggagatctttcgaatacatattttgtcggaaatgctccgatggcccatacggttgttcagccta |
10821838 |
T |
|
| Q |
252 |
atgaagaccattcaggatcctcatcttttaaggtatattcatggaaaa--ttatggtactttggtctactcttggaaggttgacatctt |
338 |
Q |
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| T |
10821837 |
aagaagagcagacaggatcaacatcttttaaggtatgtttaaaggaaattttgtggtacttcaatctactattggaaggttgacatctt |
10821749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 152 - 287
Target Start/End: Original strand, 36145449 - 36145584
Alignment:
| Q |
152 |
ttgcagtgtgctgagtctgcattgaaatcagtcataggagatctctccaatacctattttgttggaaatgctccaatggcccatatggttgttcagccta |
251 |
Q |
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| T |
36145449 |
ttgcagtgtgcagaatctgccttgaaatcagtcttgggagatctttcaaatacatattttgtcggaaatgctccgatggcccatattgttgttcagccta |
36145548 |
T |
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| Q |
252 |
atgaagaccattcaggatcctcatcttttaaggtat |
287 |
Q |
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| T |
36145549 |
aagaagagcagacaggatcaacatcttttaaggtat |
36145584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 434 - 583
Target Start/End: Complemental strand, 10821612 - 10821469
Alignment:
| Q |
434 |
attatacttgctcattttttcctttgctgaaatcttccgatagaaattcttcgtcatgatcaagtcccaagtaattgctaaaaacaagtttgactttaga |
533 |
Q |
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|||||||||||||||| ||||||||||| |||||||| | ||||||||||| ||| | || ||||||||||||||||||||||| ||| || | |
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| T |
10821612 |
attatacttgctcattctttcctttgcttaaatcttctgtcagaaattcttcttca------aatcacaagtaattgctaaaaacaagttcgacattggc |
10821519 |
T |
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| Q |
534 |
aaatgcgaggattttgtttgggtgacagaggatgaattgatggagtattt |
583 |
Q |
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| T |
10821518 |
aaatgcgaggactttgtttgggtgactaaggatgaattgattgagtattt |
10821469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 501 - 583
Target Start/End: Original strand, 36145837 - 36145919
Alignment:
| Q |
501 |
caagtaattgctaaaaacaagtttgactttagaaaatgcgaggattttgtttgggtgacagaggatgaattgatggagtattt |
583 |
Q |
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| T |
36145837 |
caagtaattgctaaaaacaagttcgacattggcaaaggtgaggactttgtttgggtgactaaggatgaattgatggagtattt |
36145919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 10822265 - 10822202
Alignment:
| Q |
17 |
cctgtgtggcattttccagagaaaccttatgaatcagaggaaaccatgcgtaaggtaaacattc |
80 |
Q |
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| T |
10822265 |
cctgtgtggcattttccagaaaaagtatatgaatcagaggaaactatgcgtaaggtgaacattc |
10822202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 36145131 - 36145194
Alignment:
| Q |
17 |
cctgtgtggcattttccagagaaaccttatgaatcagaggaaaccatgcgtaaggtaaacattc |
80 |
Q |
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| T |
36145131 |
cctgtgtggcattttccagaaaaagtatatgaatcagaggataccatgcgtaaggtgaacattc |
36145194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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