View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15591_low_5 (Length: 249)
Name: NF15591_low_5
Description: NF15591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15591_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 33223078 - 33222836
Alignment:
| Q |
1 |
tctcatagcttaggccatcaaataacctatctattatgacatcttcattctcactaattttgaagtgaattctcaaagtctcgaagtccttaaatagtca |
100 |
Q |
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| T |
33223078 |
tctcatagcttaggccatcaaataacctatctattatgacatcttcattctcgctaattttgaagtgaattctcaaagtctcgaagtccttaaatagtca |
33222979 |
T |
|
| Q |
101 |
tccacacttagggttggttcaaccttttggannnnnnnnnatgtagccccttgatagtaacatggtatacatctcttcctaaaaatttcttcaaaacaat |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||| |
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| T |
33222978 |
tccacacttagggttggttcaaccttttgga-ttttttttatgtagccccttgatagtaagatggtatatatctcttcctaaaaacttcttcaaaacaat |
33222880 |
T |
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| Q |
201 |
ctcaactaactatgttcttaataagatgg--tattattcatctc |
242 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33222879 |
ctcaactaactatgttcttaataagatggtatattattcatctc |
33222836 |
T |
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