View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15591_low_6 (Length: 237)
Name: NF15591_low_6
Description: NF15591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15591_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 42715371 - 42715578
Alignment:
| Q |
1 |
taggtcccccagtgttgtcttctgttgttgctgcaaaatacgttaatatatttaggttgtgttaaactcaacgtttttggactttgaagctaaaaatact |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
42715371 |
taggtcccccagtgttgtcttctgttgttgctgcaaaatacgttaatatatttaggttgtgttaaactcaacgtttttgaactttgaagctaaaaa---- |
42715466 |
T |
|
| Q |
101 |
tctaaggagaagtgaagtcaaaattatgttatgccaaacataacattgccatagaatgcatatacacttgtaaagaaagtgcaagaaaatgcacaaactg |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42715467 |
--------gaagtgaagtcaaaattatgttatgtcaaacataacattgccatagaatgcatatacacttgtaaagaaagtgcaagaaaatgcacaaactg |
42715558 |
T |
|
| Q |
201 |
atcttatcggtgtgcgaaat |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
42715559 |
atcttatcggtgtgcgaaat |
42715578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University