View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15591_low_8 (Length: 235)
Name: NF15591_low_8
Description: NF15591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15591_low_8 |
 | |
|
| [»] scaffold0024 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 2952147 - 2951927
Alignment:
| Q |
1 |
ttactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgttttatccattctacaactctactcggccgactat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2952147 |
ttactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgttttatccattctacaactctactcggccgacttt |
2952048 |
T |
|
| Q |
101 |
caataggatgttgcaaatgaaatatcctaatcagatcagtgaagtggcttatactaatatcaccattatcaaaatccaaatttgatttattgtaataatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
2952047 |
caataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcacccttatcaaaatccaattttgatttattgtaataacc |
2951948 |
T |
|
| Q |
201 |
aaaattacaaatagtgagttt |
221 |
Q |
| |
|
||||| | |||||||||||| |
|
|
| T |
2951947 |
aaaataatgaatagtgagttt |
2951927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 3003648 - 3003868
Alignment:
| Q |
1 |
ttactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgttttatccattctacaactctactcggccgactat |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||| | |
|
|
| T |
3003648 |
ttactttcagtgttcactttaaatctaactccagcttctaacaactcagttgcactcggtggatgtttcatccattctctgactctactcggccgacttt |
3003747 |
T |
|
| Q |
101 |
caataggatgttgcaaatgaaatatcctaatcagatcagtgaagtggcttatactaatatcaccattatcaaaatccaaatttgatttattgtaataatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
3003748 |
caataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgacttatactaatatcacccttatcaaaatccaattttgatttattgtaataacc |
3003847 |
T |
|
| Q |
201 |
aaaattacaaatagtgagttt |
221 |
Q |
| |
|
||||| | |||||||||||| |
|
|
| T |
3003848 |
aaaataatgaatagtgagttt |
3003868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 2964723 - 2964513
Alignment:
| Q |
1 |
ttactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgttttatccattctacaa------ctctactcggcc |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| || | |||||||||||| |
|
|
| T |
2964723 |
ttactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactaggtagatgtattatctgtttgttgatgttgtctctactcggcc |
2964624 |
T |
|
| Q |
95 |
gactatcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtggcttatactaatatcaccattatcaaaatccaaatttgatttattgta |
194 |
Q |
| |
|
|| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
2964623 |
gattttcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcacccttatcaaaatccaattttgatttattgta |
2964524 |
T |
|
| Q |
195 |
ataattaaaat |
205 |
Q |
| |
|
||||| ||||| |
|
|
| T |
2964523 |
ataatcaaaat |
2964513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 2927374 - 2927145
Alignment:
| Q |
1 |
ttactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgttttatccattcta--caa-------ctctactcg |
91 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||| |
|
|
| T |
2927374 |
ttactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgttttatcatccctaggcagacccggtctctactcg |
2927275 |
T |
|
| Q |
92 |
gccgactatcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtggcttatactaatatcaccattatcaaaatccaaatttgatttatt |
191 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||| |||||||||| ||| ||||||||||| |
|
|
| T |
2927274 |
gccgactttcaataggatgttgcaaatgaaatatccgaatcagatcagtgaagtgccttataataatatcacccttatcaaaattcaattttgatttatt |
2927175 |
T |
|
| Q |
192 |
gtaataattaaaattacaaatagtgagttt |
221 |
Q |
| |
|
||||||| ||||| | |||||||||||| |
|
|
| T |
2927174 |
gtaataaccaaaataatgaatagtgagttt |
2927145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 2937674 - 2937503
Alignment:
| Q |
1 |
ttactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgttttatccattctacaa------ctctactcggcc |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| | | |||||||||||| |
|
|
| T |
2937674 |
ttactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgtattatctgttcgtcgatcgcttctctactcggcc |
2937575 |
T |
|
| Q |
95 |
gactatcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtggcttatactaatatcaccat |
166 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2937574 |
gactttcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgacttatactaatatcaccat |
2937503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 2934813 - 2934589
Alignment:
| Q |
1 |
ttactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgttttatccattctacaa------ctctactcggcc |
94 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||||| |||||||||| |||||| | | || ||| | | |||||||||||| |
|
|
| T |
2934813 |
ttacttttagtattcactttaaacctaactccagcttctaacaattcagttgcaccgggtagacttatcttctgttcgtcgaacatgtctctactcggcc |
2934714 |
T |
|
| Q |
95 |
gactatcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtggcttatactaatatcaccattatcaaaatccaaatttgatttattgta |
194 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
2934713 |
gactttcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcacccttatcaaaatccaattttgatttattgta |
2934614 |
T |
|
| Q |
195 |
ataattaaaattacaaatagtgagt |
219 |
Q |
| |
|
|||| ||||| | |||||||||| |
|
|
| T |
2934613 |
ataaccaaaataatgaatagtgagt |
2934589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 2983077 - 2982881
Alignment:
| Q |
1 |
ttactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgttttatccattctacaa------ctctactcggcc |
94 |
Q |
| |
|
||||||| ||| ||||||| |||||||||||||||||||| ||||| ||||||| || ||| |||| |||||| || | | | |||||||||||| |
|
|
| T |
2983077 |
ttacttttagttttcacttgaaacctaactccagcttctaccaactgagttgcagtctgtatatgtattatccgtttttcgatcttgactctactcggcc |
2982978 |
T |
|
| Q |
95 |
gactatcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtggcttatactaatatcaccattatcaaaatccaaatttgatttatt |
191 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
2982977 |
gactttcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcaccattatcaaaagacaattttgatttatt |
2982881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 2658855 - 2659065
Alignment:
| Q |
1 |
ttactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgttttatccattctacaa-ctc-----tactcggcc |
94 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||| | | | ||||||| | |
|
|
| T |
2658855 |
ttacttttagtgctcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgtatcatccgttcgtcggtcgcgttattactcggtc |
2658954 |
T |
|
| Q |
95 |
gactatcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtggcttatactaatatcaccattatcaaaatccaaatttgatttattgta |
194 |
Q |
| |
|
|| | ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||| | |
|
|
| T |
2658955 |
gaatttcaataggaagttgcaaatgaaatatcctaatcagatcagtgaagtgcattatactaatatcaccattatcaaaaaacaagtttgatttattgga |
2659054 |
T |
|
| Q |
195 |
ataattaaaat |
205 |
Q |
| |
|
| ||| ||||| |
|
|
| T |
2659055 |
agaataaaaat |
2659065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 3 - 192
Target Start/End: Complemental strand, 2974219 - 2974024
Alignment:
| Q |
3 |
actttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgttttatccattctacaa------ctctactcggccga |
96 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| | | |||||||||||| | |
|
|
| T |
2974219 |
acttttagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgtattatttgttcatcgatctgctctctactcggccta |
2974120 |
T |
|
| Q |
97 |
ctatcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtggcttatactaatatcaccattatcaaaatccaaatttgatttattg |
192 |
Q |
| |
|
|| ||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||| |||| |||| ||||||| |
|
|
| T |
2974119 |
ctttcaataggatgtttcaaatgaaatatcctaatcagatcattgaagtgcattatactaatatcattgttatcaaaacccaattttggtttattg |
2974024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 84 - 192
Target Start/End: Original strand, 2997341 - 2997449
Alignment:
| Q |
84 |
tctactcggccgactatcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtggcttatactaatatcaccattatcaaaatccaaattt |
183 |
Q |
| |
|
||||| ||||||| | |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||| ||| |
|
|
| T |
2997341 |
tctacccggccgattttcaaagggatgttgcaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcaccatcatcaaaaaacaagttt |
2997440 |
T |
|
| Q |
184 |
gatttattg |
192 |
Q |
| |
|
||||||||| |
|
|
| T |
2997441 |
gatttattg |
2997449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 2929523 - 2929462
Alignment:
| Q |
1 |
ttactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtag |
62 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2929523 |
ttacttttagtgttcactttaaacctaactccagcttctaacaactcagttgcactccgtag |
2929462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 2997240 - 2997302
Alignment:
| Q |
4 |
ctttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgt |
66 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2997240 |
cttttagtgttcactttaaacttaactccagcttctaacaactcagttgcacttggtagatgt |
2997302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 2978458 - 2978408
Alignment:
| Q |
3 |
actttcagtgttcactttaaacctaactccagcttctaacaactcagttgca |
54 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
2978458 |
acttttagtgttcactttaaacctaa-tccagcttctaacaattcagttgca |
2978408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 3 - 197
Target Start/End: Complemental strand, 49613648 - 49613454
Alignment:
| Q |
3 |
actttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgttttatccattctacaactctactcggccgactatca |
102 |
Q |
| |
|
||||| |||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||| || ||| ||| |||| |||||| || | |
|
|
| T |
49613648 |
acttttagtgttcactttaaacctcaccccagcttctaacaactcagttgcactctgtagatgtttcattggttcatcaattctaagcggccgtctttgc |
49613549 |
T |
|
| Q |
103 |
ataggatgttgcaaatgaaatatcctaatcagatcagtgaagtggcttatactaatatcaccattatcaaaatccaaatttgatttattgtaata |
197 |
Q |
| |
|
| ||||||||||| || || ||||||||||||||||||||||| |||||||||| ||| |||||||||||| |||| ||||||| ||||||||| |
|
|
| T |
49613548 |
aaaggatgttgcaggtggaaaatcctaatcagatcagtgaagtgccttatactaaaatcgccattatcaaaacccaagtttgattgattgtaata |
49613454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 100 - 191
Target Start/End: Complemental strand, 49618527 - 49618436
Alignment:
| Q |
100 |
tcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtggcttatactaatatcaccattatcaaaatccaaatttgatttatt |
191 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||| ||||||||||| |
|
|
| T |
49618527 |
tcaataggatgttccaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcaccgtcatcaaaatccaattttgatttatt |
49618436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 49618630 - 49618589
Alignment:
| Q |
9 |
agtgttcactttaaacctaactccagcttctaacaactcagt |
50 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49618630 |
agtgttcactttaaacctaactccagcttctaacaactcagt |
49618589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 152
Target Start/End: Original strand, 35118 - 35263
Alignment:
| Q |
13 |
ttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgttttatccattctacaa------ctctactcggccgactatcaatag |
106 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||| | | ||||||| ||| |||| ||||||| |
|
|
| T |
35118 |
ttcacttgaaacctaactccagcttctaacaactgagttgcactcggtagatgtattatctgttcgtcgatcttgtctctacttggctgactttcaatag |
35217 |
T |
|
| Q |
107 |
gatgttgcaaatgaaatatcctaatcagatcagtgaagtggcttat |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35218 |
gatgttgcaaatgaaatatcctaatcagatcagtgaagtgccttat |
35263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 45123 - 45168
Alignment:
| Q |
9 |
agtgttcactttaaacctaactccagcttctaacaactcagttgca |
54 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
45123 |
agtggtcacttgaaacctaactccagcttctaacaactcatttgca |
45168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 3339237 - 3339187
Alignment:
| Q |
3 |
actttcagtgttcactttaaacctaactccagcttctaacaactcagttgc |
53 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3339237 |
acttttagtgttcactttaaacctaactcctgcttctaacaactcagttgc |
3339187 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 100 - 136
Target Start/End: Complemental strand, 3339128 - 3339092
Alignment:
| Q |
100 |
tcaataggatgttgcaaatgaaatatcctaatcagat |
136 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3339128 |
tcaataggatgttgcaaatgaaatatcctaatcagat |
3339092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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