View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15592_high_1_N (Length: 353)
Name: NF15592_high_1_N
Description: NF15592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15592_high_1_N |
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| [»] scaffold0477 (1 HSPs) |
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| [»] scaffold0002 (2 HSPs) |
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| [»] scaffold0051 (1 HSPs) |
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Alignment Details
Target: scaffold0477 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 2 - 344
Target Start/End: Original strand, 9727 - 10068
Alignment:
| Q |
2 |
attatgtaggagagatggccgagtggttgaaggcgtagcactggaactgctatgtaggctttttgtttaccgagggttcgaatccctctctttccgcacc |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9727 |
attatgtaggagagatggccgagtggttgaaggcgtagcactggaactgctatgtaggctttttgtttaccgagggttcgaatccctctctttccgcacc |
9826 |
T |
|
| Q |
102 |
cttatcaagttcatcaatgttactgacctcaatgtttgcaaatagatatcattattccaactttgatgtggattctctattcctaatttatttctgtttt |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9827 |
cttatcaagttcatcaatgttactgacctcaatgtttgcaaatagatatcattattccaactttgatgtggattctctattcctaatttatttctgtttt |
9926 |
T |
|
| Q |
202 |
ctgtaatnnnnnnnntagtggaataaagtgggcaaggaataacaattttcctatacccacccacggtctatacatgaatggggggaaatcctcggatcaa |
301 |
Q |
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| T |
9927 |
ctgtaataaaaaaaatcgtggaataaagtgggcaaggaataacaaatttcctatacccacccac-gtctatacatgaatggggggaaatcctcggatcaa |
10025 |
T |
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| Q |
302 |
aattattcttattttaattaggtttaagtctgacgagaataat |
344 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10026 |
aattattcttattttaattaggtttaagtctgacgagaataat |
10068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 2 - 344
Target Start/End: Original strand, 18180722 - 18181063
Alignment:
| Q |
2 |
attatgtaggagagatggccgagtggttgaaggcgtagcactggaactgctatgtaggctttttgtttaccgagggttcgaatccctctctttccgcacc |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18180722 |
attatgtaggagagatggccgagtggttgaaggcgtagcactggaactgctatgtaggctttttgtttaccgagggttcgaatccctctctttccgcacc |
18180821 |
T |
|
| Q |
102 |
cttatcaagttcatcaatgttactgacctcaatgtttgcaaatagatatcattattccaactttgatgtggattctctattcctaatttatttctgtttt |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18180822 |
cttatcaagttcatcaatgttactgacctcaatgtttgcaaatagatatcattattccaactttgatgtggattctctattcctaatttatttctgtttt |
18180921 |
T |
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| Q |
202 |
ctgtaatnnnnnnnntagtggaataaagtgggcaaggaataacaattttcctatacccacccacggtctatacatgaatggggggaaatcctcggatcaa |
301 |
Q |
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||||||| | |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
18180922 |
ctgtaataaaaaaaatcgtggaataaagtgggcaaggaataacaaatttcctatacccacccac-gtctatacatgaatggggggaaatcctcggatcaa |
18181020 |
T |
|
| Q |
302 |
aattattcttattttaattaggtttaagtctgacgagaataat |
344 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18181021 |
aattattcttattttaattaggtttaagtctgacgagaataat |
18181063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 2 - 241
Target Start/End: Original strand, 37189380 - 37189616
Alignment:
| Q |
2 |
attatgtaggagagatggccgagtggttgaaggcgtagcactggaactgctatgtaggctttttgtttaccgagggttcgaatccctctctttccgcacc |
101 |
Q |
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||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37189380 |
attatgtaggagagatggccgagtggttgaaggtgcagtactggaactgctatgtaggctttttgtttaccgagggttcgaa---ctctctttccgcacc |
37189476 |
T |
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| Q |
102 |
cttatcaagttcatcaatgttactgacctcaatgtttgcaaatagatatcattattccaactttgatgtggattctctattcctaatttatttctgtttt |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
37189477 |
cttatcaagttcatcaatgttactgacctcaatgtttgcaaatagatatcattattccaactttgatgtgaattctctattcctaatttatttctgtttt |
37189576 |
T |
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| Q |
202 |
ctgtaatnnnnnnnntagtggaataaagtgggcaaggaat |
241 |
Q |
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||||||| ||||||||||||||||||||||||| |
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| T |
37189577 |
ctgtaataaaaaaaatagtggaataaagtgggcaaggaat |
37189616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 3 - 97
Target Start/End: Original strand, 244818 - 244912
Alignment:
| Q |
3 |
ttatgtaggagagatggccgagtggttgaaggcgtagcactggaactgctatgtaggctttttgtttaccgagggttcgaatccctctctttccg |
97 |
Q |
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|||||||||| ||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
244818 |
ttatgtaggaaagatggccgagcggttcaaggcgtagcattggaactgctatgtaggctttttgtttaccgagggttcgaatccctctctttccg |
244912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 104
Target Start/End: Complemental strand, 207817 - 207782
Alignment:
| Q |
69 |
taccgagggttcgaatccctctctttccgcaccctt |
104 |
Q |
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|||||||||||||||||||||||||||||| ||||| |
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| T |
207817 |
taccgagggttcgaatccctctctttccgctccctt |
207782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 27029870 - 27029783
Alignment:
| Q |
2 |
attatgtaggagagatggccgagtggttgaaggcgtagcactggaactgctatgtaggc----tttttgtttaccgagggttcgaatc |
85 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||| |
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| T |
27029870 |
attatgtaggagagatggccgagtggttgaaggcgtagcactggaactgctatgtaagctttttttttttttaccgagggttcgaatc |
27029783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 97
Target Start/End: Complemental strand, 42818 - 42790
Alignment:
| Q |
69 |
taccgagggttcgaatccctctctttccg |
97 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
42818 |
taccgagggttcgaatccctctctttccg |
42790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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