View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15592_high_2 (Length: 341)
Name: NF15592_high_2
Description: NF15592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15592_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 10 - 303
Target Start/End: Complemental strand, 24766462 - 24766169
Alignment:
| Q |
10 |
ataatacttatgaaacaaaagttgaaaaacttgcaacatatgaacccaaaaccaattctggaggcttagacaaatcttaaacatcaaacgataattaaac |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24766462 |
ataatacttatgaaacaaaagttgaaaaacttgcaacatatgaacccaaaaccaattctggaggcttagacaaatcttaaacatcaaacgataattaaac |
24766363 |
T |
|
| Q |
110 |
tactgaagaacaaattatagtctttataacatgaaacaaacttctgaaacctaaaactaaaaataacatgcatccaacaaagtcctccatcgtaaaaatc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
24766362 |
tactgaagaacaaattatagtctttataacatgaaacaaacttctgaaacttaaaactaaaaataacatacatccaacaaagtcctccatcgtaaaaatc |
24766263 |
T |
|
| Q |
210 |
ccatgatgccaccaacgcttgctccacaaaatgcccataattcaacaccttcatttaaagttaacaccacgttcagtaggtttgcaaacaaaac |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24766262 |
ccatgatgccaccaacgcttgctccacaaaatgcccataatgcaacaccttcatttaaagttaacaccacgttcagtaggtttgcaaacaaaac |
24766169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 221 - 280
Target Start/End: Original strand, 21005047 - 21005107
Alignment:
| Q |
221 |
ccaacgcttgctccacaaaatgcccataattcaacaccttca-tttaaagttaacaccacg |
280 |
Q |
| |
|
|||||||||||||||||||||| || |||| ||||||||||| |||||||| ||||||||| |
|
|
| T |
21005047 |
ccaacgcttgctccacaaaatgaccgtaatgcaacaccttcattttaaagtcaacaccacg |
21005107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 287
Target Start/End: Complemental strand, 16982354 - 16982293
Alignment:
| Q |
226 |
gcttgctccacaaaatgcccataattcaacaccttcatttaaagttaacaccacgttcagta |
287 |
Q |
| |
|
||||| ||||||||||| ||| ||| |||||||||||||||||| |||| ||||| ||||| |
|
|
| T |
16982354 |
gcttgatccacaaaatgtccaaaatgcaacaccttcatttaaagcgaacatcacgtacagta |
16982293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University