View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15592_high_5 (Length: 312)

Name: NF15592_high_5
Description: NF15592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15592_high_5
NF15592_high_5
[»] chr1 (1 HSPs)
chr1 (31-312)||(32731847-32732128)


Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 31 - 312
Target Start/End: Complemental strand, 32732128 - 32731847
Alignment:
Q  31 tccaccacctccattattctcatggttagaataaaacgtcagcgtttgacgtccaccgaaccccggcgttgatcggcatgacgtgaaaaagatctcatac 130  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32732128 tccaccacctccactattgtcatggttagaataaaacgtcagcgtttgacgtccaccaaaccccggcgttgatcggcatgacgtgaaaaagatctcatac 32732029  T
Q  131 gctgtctccctcacatcatcagcgctcatactttccacatttccaaatggccattccagcccatcttcttcaccaataaccgtttcaatatggcgttggt 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32732028 gctgtctccctcacatcatcagcgctcatactttccacatttccaaatggccattccagcccatcttcttcaccaataaccgtttcaatatggcgttggt 32731929  T
Q  231 ggaggaagtcgtatgacgcagaagggtaggactcacggcggctatgctgacccatgcgccggagggtcaggataaccggtgg 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32731928 ggaggaagtcgtatgacgcagaagggtaggactcacggcggctatgctgacccatgcgccggagggtcaggataaccggtgg 32731847  T

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