View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15593_high_5 (Length: 422)
Name: NF15593_high_5
Description: NF15593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15593_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 32852694 - 32852289
Alignment:
| Q |
1 |
aagcgtgagtacatttcagttcttattggataatccatcatcagtgactaaaattaaaattcaagatagtttagtttggtaacatacaatacaatgctta |
100 |
Q |
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| T |
32852694 |
aagcgtgagtacatttcagttcttattggataatccatcatcagtgactaaaattaaaattcaagatagtttagtttggtaacatacaatacaatgctta |
32852595 |
T |
|
| Q |
101 |
ttttggcctgtgttatttaatatattcatattgttgcctaaaacttgctttcatcatgatttgataatactgcaaataatccagaaaatatggtagtcat |
200 |
Q |
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| T |
32852594 |
ttttggcttgtgttatttaatatattcatattgttgcctaaaacttgcattcatcatgatttgataatactgcaaataatccagaaaatatggtagtcat |
32852495 |
T |
|
| Q |
201 |
gttctgcattaatcatgttcacattgttaaggaattgaattcatgagcttaaatgacgacaatgcaaactagcctaatgtttctatgttattgacacaag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
32852494 |
gttctgcattaatcatgttcacattgttaaggaattgaattcatgagcttaaatgacgacattgcaaactagcctaatgtttctatgttattgacagaag |
32852395 |
T |
|
| Q |
301 |
tttgacgcatgcttcaaattcaaaatcacccgagtaataacatactttgaacttgcagctgttgaaaaagaataatagcatagtgcagtgttacactgtg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32852394 |
tttgacgcatgcttcaaattcaaaatcacccgagtaataacatactttgaacttgcagctgttgaaaaagaataatagcatagtgcagtgttacactgtg |
32852295 |
T |
|
| Q |
401 |
gttgtg |
406 |
Q |
| |
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|||||| |
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| T |
32852294 |
gttgtg |
32852289 |
T |
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