View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15593_high_9 (Length: 248)
Name: NF15593_high_9
Description: NF15593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15593_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 16 - 231
Target Start/End: Complemental strand, 5576835 - 5576619
Alignment:
| Q |
16 |
atgtacatttgaagatatttttatannnnnnn-ataaatttaaagactttagtgacaaatacaacaaggaccaaagtgaattatacttgctataattttg |
114 |
Q |
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| T |
5576835 |
atgtacatttgaagatatttttatattttttttataaatttaaaggctttagggacaaatacaacaaggaccaaagtgaattatacttgctataattttg |
5576736 |
T |
|
| Q |
115 |
ttttagtaaaaatgaatagggtgagttagtttttctcattgttacagtctaatggtttgattgtgaggatattttatgtaaaattttaggtttgaattca |
214 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5576735 |
ttttagtaaaaatgaatagggtgagttagtgtttctcattgttacagtctaatagtttgattgtgaggatattttatgtaaaattttaggtttgaattca |
5576636 |
T |
|
| Q |
215 |
tattaggacattcctct |
231 |
Q |
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||||||||||||||||| |
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| T |
5576635 |
tattaggacattcctct |
5576619 |
T |
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