View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15593_low_2 (Length: 570)

Name: NF15593_low_2
Description: NF15593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15593_low_2
NF15593_low_2
[»] chr3 (4 HSPs)
chr3 (307-555)||(49386084-49386332)
chr3 (4-311)||(49388097-49388404)
chr3 (210-394)||(7256257-7256444)
chr3 (506-552)||(7256560-7256606)
[»] chr8 (5 HSPs)
chr8 (207-555)||(9841404-9841753)
chr8 (425-555)||(9846656-9846788)
chr8 (207-287)||(9846483-9846563)
chr8 (207-316)||(9902357-9902466)
chr8 (496-555)||(9902656-9902715)
[»] chr5 (8 HSPs)
chr5 (178-400)||(39571740-39571962)
chr5 (207-400)||(39575775-39575968)
chr5 (488-552)||(39572054-39572118)
chr5 (488-552)||(39576060-39576124)
chr5 (488-555)||(4145570-4145637)
chr5 (496-533)||(2326681-2326718)
chr5 (209-270)||(2326948-2327009)
chr5 (510-555)||(3561837-3561882)
[»] chr1 (3 HSPs)
chr1 (506-555)||(46445711-46445760)
chr1 (207-555)||(5054512-5054864)
chr1 (508-555)||(46672407-46672454)


Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-135; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 307 - 555
Target Start/End: Complemental strand, 49386332 - 49386084
Alignment:
Q  307 atgacatattaatgctttcaaatatttgtagagaaattattgttgtgaaccccatcttgaagtcttggcttagaattcctccttttcccatttcttagca 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49386332 atgacatattaatgctttcaaatatttgtagagaaattattgttgtgaaccccatcttgaagtcttggcttagaattcctccttttcccatttcttagca 49386233  T
Q  407 ttgtatagtagttagctgtcaatgcactataacacgtgttcttcgcactgcaaaattcaagcttttgtagacgtctgtttagtttcaggtgctttctgat 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  49386232 ttgtatagtagttagctgtcaatgcactataacacgtgttcttcgcactgcgaaattcaagcttttgtagacgtctgtttagtttcaggtgctttctgat 49386133  T
Q  507 atgttttctatgtgctaagaattggaatacataactcatggaaagagat 555  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  49386132 atgttttctatgtgctaagaattggaatacataactcatggaaagagat 49386084  T

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Target: chr3; HSP #2
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 4 - 311
Target Start/End: Complemental strand, 49388404 - 49388097
Alignment:
Q  4 aatagtactaagagctataaagtgatttctaagctgcttcaccctaaagacttgtttctttgtatctttactctggttcctcttaattttctgtataact 103  Q
    ||||||||| |||| |||||||||||||| |||||||||| |||| |||||||||| ||||||||||||| | |||||||||||||||| ||||||||||    
T  49388404 aatagtactgagagttataaagtgatttcaaagctgcttctccctgaagacttgttgctttgtatctttattttggttcctcttaatttcctgtataact 49388305  T
Q  104 ctggcttgtatgcaaagcctgggctgcatctattggcagctcttattttgctgaactcacgaagaaaaccgatctttacattgaaaactgcaaatcacga 203  Q
    ||| |||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||    
T  49388304 ctgacttgtatgcaaagcttgggctgcaactattggaagctcttattttgctgaactcacgaagaaaatcgatctttacgttgaaaactgcaaatcatga 49388205  T
Q  204 agaagttcttatttcttggaattcgaagatgatttgaatggccaatttgaaaagactgatttgggaacatctcaaaaaatggggcatttaataggtactt 303  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49388204 agaagttcttatttcttggaattcaaagatgatttgaatggccaatttgaaaagactgatttgggaacatctcaaaaaatggggcatttaataggtactt 49388105  T
Q  304 gtgatgac 311  Q
    ||||||||    
T  49388104 gtgatgac 49388097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 210 - 394
Target Start/End: Original strand, 7256257 - 7256444
Alignment:
Q  210 tcttatttcttggaattcgaagatgatttgaatggccaatttgaaaagactgatttgggaacatctcaaaaaatggggcatttaataggtacttgtgatg 309  Q
    |||||||||||||||||  |||||  | | |||||||| ||||||| |||||||||||||||| ||||||||||||| ||| || | ||||||||| |||    
T  7256257 tcttatttcttggaatttaaagatagtgtcaatggccactttgaaaggactgatttgggaacacctcaaaaaatgggacatgtagtcggtacttgttatg 7256356  T
Q  310 acatattaatgc---tttcaaatatttgtagagaaattattgttgtgaaccccatcttgaagtcttggcttagaattcctccttttcc 394  Q
      |||||  |||   |||| |  |||  || | |||||  ||| |||||||||||| | |||| |||||||||||||||| |||||||    
T  7256357 gtatattgctgctaatttcgagaattactaaacaaatttatgtcgtgaaccccatcctcaagtgttggcttagaattccttcttttcc 7256444  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 552
Target Start/End: Original strand, 7256560 - 7256606
Alignment:
Q  506 tatgttttctatgtgctaagaattggaatacataactcatggaaaga 552  Q
    ||||||| |||||| |||||||||||| || ||||||||||||||||    
T  7256560 tatgtttactatgtactaagaattggagtagataactcatggaaaga 7256606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 207 - 555
Target Start/End: Original strand, 9841404 - 9841753
Alignment:
Q  207 agttcttatttcttggaattcgaagatgatttgaatggccaatttgaaaagactgatttgggaacatctcaaaaaatggggcatttaataggtacttgtg 306  Q
    ||||||||||||||||||||  |||||||| |||||| ||||||||||| ||||||||| |||||| |||||||| | ||  || |||| |||| |||||    
T  9841404 agttcttatttcttggaatttaaagatgatgtgaatgaccaatttgaaaggactgatttaggaacacctcaaaaactaggatatgtaatcggtagttgtg 9841503  T
Q  307 atgacatattaatgctttcaaatatttgtagagaaattattgttgtgaaccccatcttgaagtcttggcttagaattcctccttttcccatttcttagca 406  Q
    ||| ||||||  |||||   | |||   |||  |||||   || |||||||| ||| | ||||  ||||||||| |||||| |||||   ||||| || |    
T  9841504 atggcatattgctgcttatgagtatggctaggcaaatttcggtcgtgaaccctatcctcaagtgctggcttagatttcctcgttttc---tttctcagga 9841600  T
Q  407 ttgtatagtagttagctgtcaatgcactataacacgtgttcttcgcactgcaaaattcaagctt----ttgtagacgtctgtttagtttcaggtgctttc 502  Q
    |  |||||||||||| || ||||  |||||| ||||||||| ||||||| | ||||||||||||    || |||| |||  |   ||||| |||||||      
T  9841601 tcatatagtagttaggtggcaatatactatagcacgtgttcctcgcacttccaaattcaagcttttccttatagatgtccttgaggtttcgggtgcttgt 9841700  T
Q  503 tgatatgttttctatgtgctaagaattggaatacataactcatggaaagagat 555  Q
    || ||||||||||||||||| ||||| |||||| ||||  |||||||||||||    
T  9841701 tggtatgttttctatgtgctgagaatcggaatagataatgcatggaaagagat 9841753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 425 - 555
Target Start/End: Original strand, 9846656 - 9846788
Alignment:
Q  425 tcaatgcactataacacgtgttcttcgcactgcaaaattcaagctttt----gtagacgtctgtttagtttcaggtgctttctgatatgttttctatgtg 520  Q
    |||||| |||||| ||||||||| |||||| | |||||||||||||||    || || |||    | ||||||||||||||||| ||||||||||  |||    
T  9846656 tcaatgtactatagcacgtgttcctcgcaccggaaaattcaagcttttccttgtggatgtcctcatggtttcaggtgctttctggtatgttttct--gtg 9846753  T
Q  521 ctaagaattggaatacataactcatggaaagagat 555  Q
    ||||||||||||||| |||||||||||||||||||    
T  9846754 ctaagaattggaatagataactcatggaaagagat 9846788  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 207 - 287
Target Start/End: Original strand, 9846483 - 9846563
Alignment:
Q  207 agttcttatttcttggaattcgaagatgatttgaatggccaatttgaaaagactgatttgggaacatctcaaaaaatgggg 287  Q
    ||||||||||||||||||||  |||||||| |||||| ||||||||||| |||||||||||||||| |||||  |||||||    
T  9846483 agttcttatttcttggaatttaaagatgatgtgaatgaccaatttgaaaggactgatttgggaacacctcaaggaatgggg 9846563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 207 - 316
Target Start/End: Original strand, 9902357 - 9902466
Alignment:
Q  207 agttcttatttcttggaattcgaagatgatttgaatggccaatttgaaaagactgatttgggaacatctcaaaaaatggggcatttaataggtacttgtg 306  Q
    ||||||||||| ||||||||  ||||||   |||||||||||||||||| |||| ||||||||| | ||||| |||||||  || ||||  ||||| |||    
T  9902357 agttcttattttttggaatttaaagatggggtgaatggccaatttgaaaggactaatttgggaatacctcaagaaatgggagatataatttgtactcgtg 9902456  T
Q  307 atgacatatt 316  Q
    ||| ||||||    
T  9902457 atggcatatt 9902466  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 496 - 555
Target Start/End: Original strand, 9902656 - 9902715
Alignment:
Q  496 tgctttctgatatgttttctatgtgctaagaattggaatacataactcatggaaagagat 555  Q
    |||||| || |||||||||||| |||||||||| |||||| |||||||||||| ||||||    
T  9902656 tgctttttggtatgttttctatatgctaagaatcggaatagataactcatggagagagat 9902715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 178 - 400
Target Start/End: Original strand, 39571740 - 39571962
Alignment:
Q  178 tttacattgaaaactgcaaatcacgaagaagttcttatttcttggaattcgaagatgatttgaatggccaatttgaaaagactgatttgggaacatctca 277  Q
    ||||| |||||||| |||  |||  ||| |||||||||||||||||  |  |||||||| ||||| | |||||||||| || |||||||| |||| ||||    
T  39571740 tttacgttgaaaaccgcatgtcaaaaagtagttcttatttcttggatattaaagatgatatgaataggcaatttgaaaggattgatttggaaacacctca 39571839  T
Q  278 aaaaatggggcatttaataggtacttgtgatgacatattaatgctttcaaatatttgtagagaaattattgttgtgaaccccatcttgaagtcttggctt 377  Q
    || ||||||| |||||||  |||||||||||| ||||||  | ||||| |||  ||||||||||| ||| || |||||| | ||| | |||| ||||||     
T  39571840 aacaatgggggatttaatcagtacttgtgatggcatattgctactttcgaatggttgtagagaaaatatcgtcgtgaactctatcctcaagtgttggctc 39571939  T
Q  378 agaattcctccttttcccatttc 400  Q
    || ||||||| |||||| |||||    
T  39571940 aggattcctctttttccgatttc 39571962  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 207 - 400
Target Start/End: Original strand, 39575775 - 39575968
Alignment:
Q  207 agttcttatttcttggaattcgaagatgatttgaatggccaatttgaaaagactgatttgggaacatctcaaaaaatggggcatttaataggtacttgtg 306  Q
    ||||| |||||||||||  |  |||||||| ||| ||| |||||||||| || ||||||||||||| | |||| ||||||  |||||||  |||||||||    
T  39575775 agttcctatttcttggatattaaagatgatatgagtggtcaatttgaaaggattgatttgggaacaccccaaacaatgggagatttaatcagtacttgtg 39575874  T
Q  307 atgacatattaatgctttcaaatatttgtagagaaattattgttgtgaaccccatcttgaagtcttggcttagaattcctccttttcccatttc 400  Q
    ||| ||||||  | ||||| |||  ||||||| ||| | | || |||||||||||| | || | ||||||||| ||||||| |||||| |||||    
T  39575875 atggcatattgctactttcgaatcgttgtagacaaaatttcgtcgtgaaccccatcctcaaatgttggcttaggattcctctttttccgatttc 39575968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 488 - 552
Target Start/End: Original strand, 39572054 - 39572118
Alignment:
Q  488 gtttcaggtgctttctgatatgttttctatgtgctaagaattggaatacataactcatggaaaga 552  Q
    |||||||||| ||| || |||||||||||||| |||||||||||| |  ||||||||||| ||||    
T  39572054 gtttcaggtgttttttggtatgttttctatgttctaagaattggagttgataactcatggtaaga 39572118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 488 - 552
Target Start/End: Original strand, 39576060 - 39576124
Alignment:
Q  488 gtttcaggtgctttctgatatgttttctatgtgctaagaattggaatacataactcatggaaaga 552  Q
    |||||||||||||| || |||||||||||||  || |||||||||||  ||||||| ||||||||    
T  39576060 gtttcaggtgctttttggtatgttttctatgcacttagaattggaattgataactcgtggaaaga 39576124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 488 - 555
Target Start/End: Original strand, 4145570 - 4145637
Alignment:
Q  488 gtttcaggtgctttctgatatgttttctatgtgctaagaattggaatacataactcatggaaagagat 555  Q
    ||||| |||||||  || ||||| ||||||||||| ||||||||| || ||| |||||||||||||||    
T  4145570 gtttcgggtgcttattggtatgtattctatgtgcttagaattggagtagatagctcatggaaagagat 4145637  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 533
Target Start/End: Complemental strand, 2326718 - 2326681
Alignment:
Q  496 tgctttctgatatgttttctatgtgctaagaattggaa 533  Q
    ||||||||| |||||||| |||||||||||||||||||    
T  2326718 tgctttctggtatgttttttatgtgctaagaattggaa 2326681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 270
Target Start/End: Complemental strand, 2327009 - 2326948
Alignment:
Q  209 ttcttatttcttggaattcgaagatgatttgaatggccaatttgaaaagactgatttgggaa 270  Q
    ||||||||||||||||||  ||||| || |||| | ||||||||||| ||||||||| ||||    
T  2327009 ttcttatttcttggaatttaaagattatgtgaacgaccaatttgaaaggactgatttaggaa 2326948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 555
Target Start/End: Complemental strand, 3561882 - 3561837
Alignment:
Q  510 ttttctatgtgctaagaattggaatacataactcatggaaagagat 555  Q
    |||| |||||||||| |||||||||| ||||||| |||||||||||    
T  3561882 ttttttatgtgctaaaaattggaatagataactcttggaaagagat 3561837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 506 - 555
Target Start/End: Original strand, 46445711 - 46445760
Alignment:
Q  506 tatgttttctatgtgctaagaattggaatacataactcatggaaagagat 555  Q
    ||||||||||||||| |||||||||||||| |||| ||||||||||||||    
T  46445711 tatgttttctatgtgttaagaattggaatagataattcatggaaagagat 46445760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 207 - 555
Target Start/End: Complemental strand, 5054864 - 5054512
Alignment:
Q  207 agttcttatttcttggaattcgaagatgatttgaatggccaatttgaaaagactgatttgggaacatctcaaaaaatggggcatttaataggtacttgtg 306  Q
    ||||||||||||||||||||| ||||  || |||||||||||||||||| |  ||| ||||||||| |||  ||||  |  ||| ||||  |||||||||    
T  5054864 agttcttatttcttggaattcaaagacaatgtgaatggccaatttgaaaggtatgaattgggaacacctcgtaaaacagaacatctaatcagtacttgtg 5054765  T
Q  307 atgacatattaatgctttcaaatatttgtagagaaattattgttgtgaaccccatcttgaagtcttggcttagaattcctccttttcccatttcttagca 406  Q
    |||  |||||  ||||||  | ||||| | || ||||  | || |  ||||||||| | |||    || ||||||||||||||||||| ||| || |||     
T  5054764 atggtatattgctgcttttgagtatttctggacaaatcttcgtcgcaaaccccatcctcaagcgcgggtttagaattcctccttttccaattcctcagcc 5054665  T
Q  407 ttgtatagtagttagctgtcaatgcactataacacgtgttcttcgcactgcaaaattcaagcttttgt----agacgtctgtttagtttcaggtgctttc 502  Q
      ||||| |||||||   |||||| |||||| ||||||||| || |||| | |||||||||||||| |    | | || | |    |||| | | |||||    
T  5054664 acgtataatagttaggcatcaatgtactatagcacgtgttcctctcacttccaaattcaagcttttctttttacatgtttttgcgatttctgcttctttc 5054565  T
Q  503 tgatatgttttctatgtgctaagaattggaatacataactcatggaaagagat 555  Q
    || |||||||||||||||||||||||  ||||| ||||||| ||||| |||||    
T  5054564 tggtatgttttctatgtgctaagaataagaatagataactcgtggaacgagat 5054512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 508 - 555
Target Start/End: Complemental strand, 46672454 - 46672407
Alignment:
Q  508 tgttttctatgtgctaagaattggaatacataactcatggaaagagat 555  Q
    ||||||||||||||| |||||| ||||| |||| ||||||||||||||    
T  46672454 tgttttctatgtgctgagaattagaatagataattcatggaaagagat 46672407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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