View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15593_low_3 (Length: 539)
Name: NF15593_low_3
Description: NF15593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15593_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 1 - 520
Target Start/End: Complemental strand, 40050951 - 40050432
Alignment:
| Q |
1 |
ccaacagatattatccgaatcctcaaaaaagccggcggattcaccacccttatccgcctcctccaaaccactcaagtagccacacaaatcaatgcacaac |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40050951 |
ccaacagatattatccgaatcctcaaaaaagccggtggattcaccacccttatccgcctcctccaaaccactcaagtagccacacaaatcaatgcacaac |
40050852 |
T |
|
| Q |
101 |
tcctaaactcaaacaatggattaacactctttgcaccaaatgacaattccttttcaaccctcaaacctggttttctcaattcccttaatgatcaacaaaa |
200 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40050851 |
tcctaaactcaaacaatggactaacactctttgcaccaaatgacaattccttttcaaccctcaaacctggttttctcaattcccttaatgatcaacaaaa |
40050752 |
T |
|
| Q |
201 |
gaatgagcttattcaattccatgaactaccctcatttgttgcactctcaaattttgatactttaagcaacccagttagaacacaagctggtgatgatcct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40050751 |
gaatgagcttattcaattccatgaactaccctcatttgttgcactctcaaattttgatactttaagcaacccagttagaacacaagctggtgatgatcct |
40050652 |
T |
|
| Q |
301 |
gagagattagcattgaatataacaagttcagggactcaagtgaatttaacaactggtgttgttaatgctactgttggtggtagtgttttttctgatcatc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40050651 |
gagagattagcattgaatataacaagttcagggactcaagtgaatttaacaactggtgttgttaatgctactgttggtggtagtgttttttctgatcatc |
40050552 |
T |
|
| Q |
401 |
aacttgctatttatcaagttgataaggttcttcttcctaaggatttcttcattcccaagtctcctccaccggctccagcaccagaaaagagtaaagattc |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
40050551 |
aacttgctatttatcaagttgataaggttcttcttcctaaggatttcttcattcccaagtctcctccaccggctccggcaccagaaaagagtaaagattc |
40050452 |
T |
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| Q |
501 |
caagaaaaaatctgcagagg |
520 |
Q |
| |
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|||||||||||||||||||| |
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| T |
40050451 |
caagaaaaaatctgcagagg |
40050432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 7e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 1 - 490
Target Start/End: Original strand, 22034745 - 22035234
Alignment:
| Q |
1 |
ccaacagatattatccgaatcctcaaaaaagccggcggattcaccacccttatccgcctcctccaaaccactcaagtagccacacaaatcaatgcacaac |
100 |
Q |
| |
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||||| || |||||| ||||||||||||| || || || |||||||| || ||||| || ||||||||||| ||||| |||| |||||||| | |||| |
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| T |
22034745 |
ccaaccgacattatcagaatcctcaaaaaggctggagggttcaccacgctaatccgtcttctccaaaccacacaagtgtccacccaaatcaactctcaac |
22034844 |
T |
|
| Q |
101 |
tcctaaactcaaacaatggattaacactctttgcaccaaatgacaattccttttcaaccctcaaacctggttttctcaattcccttaatgatcaacaaaa |
200 |
Q |
| |
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|| ||||||| ||| ||| ||||| | ||||||||||| |||||||||||||||| |||||||| || || |||||||| |||| ||| ||||||| |
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| T |
22034845 |
tcttaaactcgaacggtggtttaaccttgtttgcaccaaacgacaattccttttcaagtctcaaacccggcttcctcaattcgcttagcgatgaacaaaa |
22034944 |
T |
|
| Q |
201 |
gaatgagcttattcaattccatgaactaccctcatttgttgcactctcaaattttgatactttaagcaacccagttagaacacaagctggtgatgatcct |
300 |
Q |
| |
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||| |||| || |||||||| ||||| ||||||| | | ||||||||||||||||| |||||||| || |||||||| ||||||||||| ||| |
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| T |
22034945 |
gaacaagctcatccaattccacttgctacctacatttgtatccatgtcaaattttgatactttgagcaacccggtgagaacacaggctggtgatgaccct |
22035044 |
T |
|
| Q |
301 |
gagagattagcattgaatataacaagttcagggactcaagtgaatttaacaactggtgttgttaatgctactgttggtggtagtgttttttctgatcatc |
400 |
Q |
| |
|
| || || | | ||||| ||||||||||||| | |||||||| | ||||| ||| ||||||||| || || ||||| | ||||| | ||||| | |
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| T |
22035045 |
tataggttgggactgaatgtaacaagttcaggaaaccaagtgaacatgacaacaggtattgttaatgtcacagtcggtggcactgtttacaccgatcacc |
22035144 |
T |
|
| Q |
401 |
aacttgctatttatcaagttgataaggttcttcttcctaaggatttcttcattcccaagtctcctccaccggctccagcaccagaaaaga |
490 |
Q |
| |
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| ||||| |||| ||||| || || || || |||||| ||||||||| || | ||| ||||| | |||||||||||||| ||||||| |
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| T |
22035145 |
agcttgcagtttaccaagtggacaaagtgctccttcctcgggatttctttgttgctaagcctcctgctccggctccagcaccggaaaaga |
22035234 |
T |
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