View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15593_low_4 (Length: 468)

Name: NF15593_low_4
Description: NF15593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15593_low_4
NF15593_low_4
[»] chr5 (14 HSPs)
chr5 (1-233)||(41890391-41890623)
chr5 (364-455)||(41890116-41890207)
chr5 (174-218)||(7885021-7885066)
chr5 (176-236)||(25962802-25962863)
chr5 (176-223)||(31312781-31312828)
chr5 (173-218)||(16867757-16867803)
chr5 (176-226)||(21039865-21039915)
chr5 (172-236)||(22756378-22756444)
chr5 (173-223)||(30916480-30916530)
chr5 (175-236)||(31601748-31601809)
chr5 (173-206)||(31920057-31920090)
chr5 (176-228)||(12148231-12148283)
chr5 (176-236)||(29690962-29691022)
chr5 (176-236)||(37082271-37082331)
[»] chr4 (6 HSPs)
chr4 (175-228)||(7913435-7913488)
chr4 (177-206)||(17494577-17494606)
chr4 (173-206)||(27627009-27627042)
chr4 (176-236)||(31226495-31226556)
chr4 (176-216)||(19909342-19909382)
chr4 (176-228)||(29104159-29104211)
[»] scaffold0022 (1 HSPs)
scaffold0022 (173-236)||(63345-63409)
[»] scaffold0026 (1 HSPs)
scaffold0026 (175-218)||(84443-84485)
[»] chr7 (17 HSPs)
chr7 (174-228)||(35158181-35158235)
chr7 (173-218)||(18828932-18828977)
chr7 (176-236)||(21444179-21444240)
chr7 (172-218)||(4098093-4098140)
chr7 (172-223)||(31534169-31534220)
chr7 (176-218)||(41877086-41877129)
chr7 (176-226)||(20164430-20164480)
chr7 (173-218)||(23775134-23775180)
chr7 (173-218)||(47532781-47532827)
chr7 (173-218)||(10068087-10068132)
chr7 (173-214)||(18449604-18449645)
chr7 (173-206)||(41380731-41380764)
chr7 (176-216)||(442869-442909)
chr7 (175-218)||(18318463-18318507)
chr7 (179-222)||(22317531-22317575)
chr7 (176-236)||(24478024-24478084)
chr7 (173-236)||(36374144-36374207)
[»] chr1 (12 HSPs)
chr1 (176-226)||(47980090-47980140)
chr1 (176-236)||(20158963-20159023)
chr1 (173-214)||(24169353-24169394)
chr1 (176-228)||(418429-418481)
chr1 (177-228)||(27265704-27265755)
chr1 (173-218)||(15734471-15734517)
chr1 (177-215)||(20158653-20158691)
chr1 (176-214)||(31883453-31883491)
chr1 (176-217)||(26399190-26399231)
chr1 (174-218)||(32116173-32116218)
chr1 (173-213)||(22387513-22387553)
chr1 (173-216)||(51237959-51238003)
[»] scaffold0312 (1 HSPs)
scaffold0312 (176-228)||(12090-12142)
[»] chr8 (12 HSPs)
chr8 (176-208)||(19152467-19152499)
chr8 (176-218)||(2873780-2873822)
chr8 (176-218)||(13572540-13572582)
chr8 (173-218)||(22981051-22981097)
chr8 (179-228)||(34845573-34845623)
chr8 (176-218)||(35839410-35839452)
chr8 (178-223)||(15935716-15935761)
chr8 (173-236)||(25654018-25654083)
chr8 (176-225)||(34227327-34227376)
chr8 (176-216)||(4334999-4335039)
chr8 (176-236)||(30222084-30222144)
chr8 (176-216)||(38711957-38711997)
[»] chr3 (9 HSPs)
chr3 (173-217)||(26769918-26769962)
chr3 (172-218)||(5154717-5154764)
chr3 (176-215)||(38703320-38703359)
chr3 (176-218)||(25024539-25024581)
chr3 (174-214)||(3526537-3526578)
chr3 (174-218)||(7731268-7731313)
chr3 (174-218)||(51830354-51830399)
chr3 (173-216)||(7014972-7015016)
chr3 (175-218)||(37585635-37585679)
[»] chr2 (10 HSPs)
chr2 (176-236)||(36525589-36525649)
chr2 (175-218)||(943841-943884)
chr2 (175-236)||(19272661-19272723)
chr2 (175-217)||(22846012-22846054)
chr2 (176-236)||(38127763-38127824)
chr2 (174-206)||(24226681-24226713)
chr2 (176-228)||(28761835-28761887)
chr2 (174-206)||(31989348-31989380)
chr2 (174-236)||(33218639-33218703)
chr2 (175-218)||(34963595-34963639)
[»] scaffold0004 (1 HSPs)
scaffold0004 (175-217)||(212512-212554)
[»] scaffold0002 (2 HSPs)
scaffold0002 (178-236)||(332067-332125)
scaffold0002 (173-228)||(432719-432775)
[»] chr6 (5 HSPs)
chr6 (176-217)||(17158115-17158157)
chr6 (176-217)||(10545831-10545872)
chr6 (176-217)||(13462620-13462661)
chr6 (173-216)||(28632011-28632055)
chr6 (176-228)||(31656367-31656418)


Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 41890623 - 41890391
Alignment:
Q  1 cgtcccaacatggcaacatcctaatgtagacaattaaacacctataagtatcacaatgttgacatatttccagaattttagtcacacatatttcaagcat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  41890623 cgtcccaacatggcaacatcctaatgtagacaattaaacacctataagtatcacaatgttgacatatttccagaattttggtcacacatatttcaagcat 41890524  T
Q  101 tcatgtcatcaatatttcatgaacactttccactaccacttaatcgagttatatagagaaaaagaaaattcatttgggttaatagtgttttaacccctgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  41890523 tcatgtcatcaatatttcatgaacactttccactaccacttaatcgagttatatagagaaaaagaaaattcatttgggttaatagtgttttactccctgt 41890424  T
Q  201 aatatatgacattttcggatttatccccgtaaa 233  Q
    ||||||||  |||||||| ||||||||||||||    
T  41890423 aatatatgttattttcgggtttatccccgtaaa 41890391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 364 - 455
Target Start/End: Complemental strand, 41890207 - 41890116
Alignment:
Q  364 tattttatagggggtaaacctggaaattacttatattacatgagggtaaagtaggtgacggcgttcacataaaatctaaaattgtcacatat 455  Q
    ||||||| ||||||||||||||||||| || ||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||    
T  41890207 tattttacagggggtaaacctggaaatgacatatattacatgggagtaaagtaggtgacggtgttcacataaaatctaaaattgtcacatat 41890116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 7885066 - 7885021
Alignment:
Q  174 ttgggttaatagtgtttt-aacccctgtaatatatgacattttcgg 218  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||    
T  7885066 ttgggttaatagtgtttttaacccctgtaatatatgtcattttcgg 7885021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 25962802 - 25962863
Alignment:
Q  176 gggttaatagtgttttaacccctgtaatatatgacattttcggatttatcccc-gtaaaata 236  Q
    ||||||||||||||||| ||||||||||||| | ||||||||| |||| |||| ||||||||    
T  25962802 gggttaatagtgttttaccccctgtaatataggtcattttcggttttaccccctgtaaaata 25962863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 223
Target Start/End: Complemental strand, 31312828 - 31312781
Alignment:
Q  176 gggttaatagtgttttaacccctgtaatatatgacattttcggattta 223  Q
    ||||||||||||||||| ||||||||||||| | ||||||||| ||||    
T  31312828 gggttaatagtgttttaccccctgtaatataggtcattttcggtttta 31312781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 16867757 - 16867803
Alignment:
Q  173 tttgggttaatagtgtttta-acccctgtaatatatgacattttcgg 218  Q
    |||||||||||||||||||  |||||||||||||||| |||||||||    
T  16867757 tttgggttaatagtgtttttcacccctgtaatatatgtcattttcgg 16867803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 21039865 - 21039915
Alignment:
Q  176 gggttaatagtgttttaacccctgtaatatatgacattttcggatttatcc 226  Q
    ||||||||||||||||| ||||||||||||| | ||||||| | |||||||    
T  21039865 gggttaatagtgttttaccccctgtaatataggtcattttcagttttatcc 21039915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 236
Target Start/End: Complemental strand, 22756444 - 22756378
Alignment:
Q  172 atttgggttaatagtgtttta-acccctgtaatatatgacattttcggatttatcccc-gtaaaata 236  Q
    |||||||||||||||||||||  ||||||||||||| | ||||||||| |||| |||| ||||||||    
T  22756444 atttgggttaatagtgttttacccccctgtaatataggtcattttcggttttaccccctgtaaaata 22756378  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 223
Target Start/End: Original strand, 30916480 - 30916530
Alignment:
Q  173 tttgggttaatagtgttttaacccctgtaatatatgacattttcggattta 223  Q
    |||||||||||||| ||||| ||||| ||||||||| ||||||||| ||||    
T  30916480 tttgggttaatagttttttaccccctataatatatgtcattttcggtttta 30916530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 31601748 - 31601809
Alignment:
Q  175 tgggttaatagtgttttaacccctgtaatatatgacattttcggatttatccccgtaaaata 236  Q
    ||||||||| |||||||| ||||||||||||||| |||||| || ||| || | ||||||||    
T  31601748 tgggttaatggtgttttaccccctgtaatatatgtcatttttggttttttctctgtaaaata 31601809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 206
Target Start/End: Original strand, 31920057 - 31920090
Alignment:
Q  173 tttgggttaatagtgttttaacccctgtaatata 206  Q
    |||||||||||||||||||| |||||||||||||    
T  31920057 tttgggttaatagtgttttaccccctgtaatata 31920090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 228
Target Start/End: Complemental strand, 12148283 - 12148231
Alignment:
Q  176 gggttaatagtgttttaacccctgtaatatatgacattttcggatttatcccc 228  Q
    ||||||||||||||||| ||||||||||||| | ||||| ||| |||| ||||    
T  12148283 gggttaatagtgttttaccccctgtaatataggtcatttccggttttaccccc 12148231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 29690962 - 29691022
Alignment:
Q  176 gggttaatagtgttttaacccctgtaatatatgacattttcggatttatccccgtaaaata 236  Q
    ||||||||||||||| | ||| ||||||||| | ||||||||| |||| ||| ||||||||    
T  29690962 gggttaatagtgtttcaccccttgtaatataggtcattttcggttttacccctgtaaaata 29691022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 37082331 - 37082271
Alignment:
Q  176 gggttaatagtgttttaacccctgtaatatatgacattttcggatttatccccgtaaaata 236  Q
    ||||||||||||||||| ||||||||||||| |  |||| ||| |||| ||| ||||||||    
T  37082331 gggttaatagtgttttaccccctgtaatataggtaatttccggttttacccctgtaaaata 37082271  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 7913488 - 7913435
Alignment:
Q  175 tgggttaatagtgttttaacccctgtaatatatgacattttcggatttatcccc 228  Q
    |||||||||||||||||| ||||||||||||||| ||||||||| |||| ||||    
T  7913488 tgggttaatagtgttttaccccctgtaatatatgtcattttcggttttaccccc 7913435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 206
Target Start/End: Complemental strand, 17494606 - 17494577
Alignment:
Q  177 ggttaatagtgttttaacccctgtaatata 206  Q
    ||||||||||||||||||||||||||||||    
T  17494606 ggttaatagtgttttaacccctgtaatata 17494577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 206
Target Start/End: Complemental strand, 27627042 - 27627009
Alignment:
Q  173 tttgggttaatagtgttttaacccctgtaatata 206  Q
    |||||||||||||||||||| |||||||||||||    
T  27627042 tttgggttaatagtgttttaccccctgtaatata 27627009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 31226556 - 31226495
Alignment:
Q  176 gggttaatagtgttttaacccctgtaatatatgacattttcggatttatcccc-gtaaaata 236  Q
    ||||||||||||||||| ||||||||||||| | ||||| ||| |||| |||| ||||||||    
T  31226556 gggttaatagtgttttaccccctgtaatataggtcatttccggttttaccccctgtaaaata 31226495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 19909382 - 19909342
Alignment:
Q  176 gggttaatagtgttttaacccctgtaatatatgacattttc 216  Q
    ||||||||||||||||| ||||||||||||| | |||||||    
T  19909382 gggttaatagtgttttaccccctgtaatataggtcattttc 19909342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 228
Target Start/End: Original strand, 29104159 - 29104211
Alignment:
Q  176 gggttaatagtgttttaacccctgtaatatatgacattttcggatttatcccc 228  Q
    ||||||||||||||||| ||||||||||||| | ||||| ||| |||| ||||    
T  29104159 gggttaatagtgttttaccccctgtaatataggtcatttccggttttaccccc 29104211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 236
Target Start/End: Complemental strand, 63409 - 63345
Alignment:
Q  173 tttgggttaatagtgttttaacccctgtaatatatgacattttcggatttatcccc-gtaaaata 236  Q
    |||||||||||||||||||| ||||||||||||| | ||||| ||| ||||||||| ||||||||    
T  63409 tttgggttaatagtgttttaccccctgtaatataggtcatttccggttttatcccctgtaaaata 63345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 175 - 218
Target Start/End: Complemental strand, 84485 - 84443
Alignment:
Q  175 tgggttaatagtgttttaacccctgtaatatatgacattttcgg 218  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  84485 tgggttaatagtgtttta-cccctgtaatatatgacattttcgg 84443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 35158181 - 35158235
Alignment:
Q  174 ttgggttaatagtgttttaacccctgtaatatatgacattttcggatttatcccc 228  Q
    ||||||||||||||||||| ||||||||||||| | ||||||||| |||| ||||    
T  35158181 ttgggttaatagtgttttatcccctgtaatataggtcattttcggttttaccccc 35158235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 18828977 - 18828932
Alignment:
Q  173 tttgggttaatagtgttttaacccctgtaatatatgacattttcgg 218  Q
    ||||||| |||||||||||| ||||||||||||||| |||||||||    
T  18828977 tttgggtcaatagtgttttaccccctgtaatatatgtcattttcgg 18828932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 21444240 - 21444179
Alignment:
Q  176 gggttaatagtgttttaacccctgtaatatatgacattttcggatttatcccc-gtaaaata 236  Q
    ||||||||||||||||| ||||||||||||| | ||||||||| |||| |||| ||||||||    
T  21444240 gggttaatagtgttttaccccctgtaatataggtcattttcggttttaccccctgtaaaata 21444179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 218
Target Start/End: Original strand, 4098093 - 4098140
Alignment:
Q  172 atttgggttaatagtgtttta-acccctgtaatatatgacattttcgg 218  Q
    ||||||||||||||||||||  |||||||||||||||| |||||||||    
T  4098093 atttgggttaatagtgtttttcacccctgtaatatatgtcattttcgg 4098140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 223
Target Start/End: Complemental strand, 31534220 - 31534169
Alignment:
Q  172 atttgggttaatagtgttttaacccctgtaatatatgacattttcggattta 223  Q
    |||||||||||||||||||||  |||||||||||| | ||||| ||||||||    
T  31534220 atttgggttaatagtgttttacaccctgtaatataagtcatttccggattta 31534169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 218
Target Start/End: Original strand, 41877086 - 41877129
Alignment:
Q  176 gggttaatagtgtttt-aacccctgtaatatatgacattttcgg 218  Q
    |||||||||||||||| ||||||||||||||||| |||||||||    
T  41877086 gggttaatagtgtttttaacccctgtaatatatgtcattttcgg 41877129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 20164480 - 20164430
Alignment:
Q  176 gggttaatagtgttttaacccctgtaatatatgacattttcggatttatcc 226  Q
    ||||||||||||||||| ||||||||||||| | ||||||||  |||||||    
T  20164480 gggttaatagtgttttaccccctgtaatataggtcattttcgattttatcc 20164430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 23775180 - 23775134
Alignment:
Q  173 tttgggttaatagtgtttta-acccctgtaatatatgacattttcgg 218  Q
    |||||||||||||||||||  |||||||||||||||| |||||||||    
T  23775180 tttgggttaatagtgtttttcacccctgtaatatatgtcattttcgg 23775134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 47532781 - 47532827
Alignment:
Q  173 tttgggttaatagtg-ttttaacccctgtaatatatgacattttcgg 218  Q
    ||||||||||||||| |||| |||||||||||||||| |||||||||    
T  47532781 tttgggttaatagtgcttttcacccctgtaatatatgtcattttcgg 47532827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 10068132 - 10068087
Alignment:
Q  173 tttgggttaatagtgttttaacccctgtaatatatgacattttcgg 218  Q
    ||||| |||||||||||||| ||||||||||||||  |||||||||    
T  10068132 tttggattaatagtgttttaccccctgtaatatatatcattttcgg 10068087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 18449645 - 18449604
Alignment:
Q  173 tttgggttaatagtgttttaacccctgtaatatatgacattt 214  Q
    ||||| ||||||||||||| |||||||||||||||| |||||    
T  18449645 tttggattaatagtgttttcacccctgtaatatatgtcattt 18449604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 206
Target Start/End: Complemental strand, 41380764 - 41380731
Alignment:
Q  173 tttgggttaatagtgttttaacccctgtaatata 206  Q
    |||||||||||||||||||| |||||||||||||    
T  41380764 tttgggttaatagtgttttaccccctgtaatata 41380731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 442909 - 442869
Alignment:
Q  176 gggttaatagtgttttaacccctgtaatatatgacattttc 216  Q
    ||||||||||||||||| ||||||||||||| | |||||||    
T  442909 gggttaatagtgttttaccccctgtaatataggccattttc 442869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 18318463 - 18318507
Alignment:
Q  175 tgggttaatagtg-ttttaacccctgtaatatatgacattttcgg 218  Q
    ||||||||||||| |||| |||||||||||||||| |||||||||    
T  18318463 tgggttaatagtgcttttcacccctgtaatatatgtcattttcgg 18318507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 22317575 - 22317531
Alignment:
Q  179 ttaatagtgtttta-acccctgtaatatatgacattttcggattt 222  Q
    |||||||||||||| |||||||||||||| | |||||||||||||    
T  22317575 ttaatagtgttttacacccctgtaatataagccattttcggattt 22317531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 24478024 - 24478084
Alignment:
Q  176 gggttaatagtgttttaacccctgtaatatatgacattttcggatttatccccgtaaaata 236  Q
    ||||||||||||||||| ||||||||||||| | ||||| ||| |||  ||| ||||||||    
T  24478024 gggttaatagtgttttaccccctgtaatataggtcatttccggtttttcccctgtaaaata 24478084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 236
Target Start/End: Original strand, 36374144 - 36374207
Alignment:
Q  173 tttgggttaatagtgttttaacccctgtaatatatgacattttcggatttatcccc-gtaaaata 236  Q
    ||||||||||||||||||| |||||| ||||||| | ||||||||  ||||||||| ||||||||    
T  36374144 tttgggttaatagtgtttt-acccctataatataggtcattttcgattttatcccctgtaaaata 36374207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 47980140 - 47980090
Alignment:
Q  176 gggttaatagtgttttaacccctgtaatatatgacattttcggatttatcc 226  Q
    ||||||||| ||||||||||||||||||||||| ||| ||||| |||||||    
T  47980140 gggttaataatgttttaacccctgtaatatatgtcatcttcggttttatcc 47980090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 20159023 - 20158963
Alignment:
Q  176 gggttaatagtgttttaacccctgtaatatatgacattttcggatttatcccc-gtaaaata 236  Q
    ||||||||||||||||| ||||||||||||| | ||||||||| ||||||||| ||||||||    
T  20159023 gggttaatagtgtttta-cccctgtaatataggtcattttcggttttatcccctgtaaaata 20158963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 24169394 - 24169353
Alignment:
Q  173 tttgggttaatagtgttttaacccctgtaatatatgacattt 214  Q
    ||||||||||||||||||| |||||||||||||||| |||||    
T  24169394 tttgggttaatagtgttttcacccctgtaatatatgtcattt 24169353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 228
Target Start/End: Original strand, 418429 - 418481
Alignment:
Q  176 gggttaatagtgttttaacccctgtaatatatgacattttcggatttatcccc 228  Q
    ||||||||| || |||||||||||||||||| | ||||||||| |||||||||    
T  418429 gggttaataatgctttaacccctgtaatataggtcattttcgggtttatcccc 418481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 27265704 - 27265755
Alignment:
Q  177 ggttaatagtgttttaacccctgtaatatatgacattttcggatttatcccc 228  Q
    |||||||||||||||| ||||||||||||| | ||||||||| ||| |||||    
T  27265704 ggttaatagtgttttaccccctgtaatataagtcattttcgggtttgtcccc 27265755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 15734471 - 15734517
Alignment:
Q  173 tttgggttaatagtgtttta-acccctgtaatatatgacattttcgg 218  Q
    |||||||||||||||||||  |||||||||||||||| |||||||||    
T  15734471 tttgggttaatagtgtttttcacccctgtaatatatgtcattttcgg 15734517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 215
Target Start/End: Original strand, 20158653 - 20158691
Alignment:
Q  177 ggttaatagtgttttaacccctgtaatatatgacatttt 215  Q
    ||||||||||||||||||||||||||| |||| ||||||    
T  20158653 ggttaatagtgttttaacccctgtaatttatgtcatttt 20158691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 214
Target Start/End: Original strand, 31883453 - 31883491
Alignment:
Q  176 gggttaatagtgttttaacccctgtaatatatgacattt 214  Q
    ||||||||||||||||| ||||||||||||||| |||||    
T  31883453 gggttaatagtgttttaccccctgtaatatatgtcattt 31883491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 26399231 - 26399190
Alignment:
Q  176 gggttaatagtgttttaacccctgtaatatatgacattttcg 217  Q
    ||||||||||||||||| ||||||||||||| | ||||||||    
T  26399231 gggttaatagtgttttaccccctgtaatataggtcattttcg 26399190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 32116173 - 32116218
Alignment:
Q  174 ttgggttaatagtg-ttttaacccctgtaatatatgacattttcgg 218  Q
    |||||||||||||| |||| |||||||||||||||| |||||||||    
T  32116173 ttgggttaatagtgcttttcacccctgtaatatatgtcattttcgg 32116218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 22387553 - 22387513
Alignment:
Q  173 tttgggttaatagtgttttaacccctgtaatatatgacatt 213  Q
    |||||||||||||||||| | ||||||||||||||| ||||    
T  22387553 tttgggttaatagtgtttgaccccctgtaatatatgtcatt 22387513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 216
Target Start/End: Original strand, 51237959 - 51238003
Alignment:
Q  173 tttgggttaatagtgtttta-acccctgtaatatatgacattttc 216  Q
    |||||||||||||||||||  |||||||||||||||| |||||||    
T  51237959 tttgggttaatagtgtttttcacccctgtaatatatgtcattttc 51238003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 228
Target Start/End: Complemental strand, 12142 - 12090
Alignment:
Q  176 gggttaatagtgttttaacccctgtaatatatgacattttcggatttatcccc 228  Q
    ||||||||| || |||||||||||||||||| | ||||||||| |||||||||    
T  12142 gggttaataatgctttaacccctgtaatataggtcattttcgggtttatcccc 12090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 19152499 - 19152467
Alignment:
Q  176 gggttaatagtgttttaacccctgtaatatatg 208  Q
    |||||||||||||||||||||||||||||||||    
T  19152499 gggttaatagtgttttaacccctgtaatatatg 19152467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 218
Target Start/End: Complemental strand, 2873822 - 2873780
Alignment:
Q  176 gggttaatagtgttttaacccctgtaatatatgacattttcgg 218  Q
    ||||||||||||||||| ||||||||||||| | |||||||||    
T  2873822 gggttaatagtgttttaccccctgtaatataagtcattttcgg 2873780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 218
Target Start/End: Original strand, 13572540 - 13572582
Alignment:
Q  176 gggttaatagtgttttaacccctgtaatatatgacattttcgg 218  Q
    ||||||||||||||||| ||||||||||||| | |||||||||    
T  13572540 gggttaatagtgttttaccccctgtaatataggtcattttcgg 13572582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 22981097 - 22981051
Alignment:
Q  173 tttgggttaatagtgtttta-acccctgtaatatatgacattttcgg 218  Q
    |||||||||||||||||||  |||||||||||||||| |||||||||    
T  22981097 tttgggttaatagtgtttttcacccctgtaatatatgtcattttcgg 22981051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 34845623 - 34845573
Alignment:
Q  179 ttaatagtgttttaac-ccctgtaatatatgacattttcggatttatcccc 228  Q
    |||||||||||||||  |||||||||||||| ||||||||| |||||||||    
T  34845623 ttaatagtgttttaattccctgtaatatatgtcattttcggttttatcccc 34845573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 218
Target Start/End: Original strand, 35839410 - 35839452
Alignment:
Q  176 gggttaatagtgttttaacccctgtaatatatgacattttcgg 218  Q
    ||||||||||||||||| | ||||||||||||| |||||||||    
T  35839410 gggttaatagtgttttacctcctgtaatatatgtcattttcgg 35839452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 15935761 - 15935716
Alignment:
Q  178 gttaatagtgttttaacccctgtaatatatgacattttcggattta 223  Q
    ||||||||||||||| |||||||||| |||| ||||||||| ||||    
T  15935761 gttaatagtgttttaccccctgtaatgtatgtcattttcggtttta 15935716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 236
Target Start/End: Complemental strand, 25654083 - 25654018
Alignment:
Q  173 tttgggttaatagtgttttaacccc-tgtaatatatgacattttcggatttatcccc-gtaaaata 236  Q
    ||||||||||||||||||||||||| ||||||||| | ||||| ||| |||| |||| ||||||||    
T  25654083 tttgggttaatagtgttttaaccccatgtaatataggtcatttccggttttaccccctgtaaaata 25654018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 34227327 - 34227376
Alignment:
Q  176 gggttaatagtgttttaacccctgtaatatatgacattttcggatttatc 225  Q
    ||||||||||||||||| ||||||||||||| | ||||| ||| ||||||    
T  34227327 gggttaatagtgttttaccccctgtaatataggtcatttccggttttatc 34227376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 4335039 - 4334999
Alignment:
Q  176 gggttaatagtgttttaacccctgtaatatatgacattttc 216  Q
    ||||||||||||||||| ||||||||||||| | |||||||    
T  4335039 gggttaatagtgttttaccccctgtaatataggtcattttc 4334999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 30222144 - 30222084
Alignment:
Q  176 gggttaatagtgttttaacccctgtaatatatgacattttcggatttatccccgtaaaata 236  Q
    |||||||||||| |||| ||||||||||||| | ||||||||| |||  ||| ||||||||    
T  30222144 gggttaatagtgctttaccccctgtaatataggtcattttcggttttccccctgtaaaata 30222084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 38711997 - 38711957
Alignment:
Q  176 gggttaatagtgttttaacccctgtaatatatgacattttc 216  Q
    ||||||||||||||||| ||||||||||||| | |||||||    
T  38711997 gggttaatagtgttttaccccctgtaatataggtcattttc 38711957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 26769918 - 26769962
Alignment:
Q  173 tttgggttaatagtgttttaacccctgtaatatatgacattttcg 217  Q
    |||||||||||||||||||| ||||||||||||| | ||||||||    
T  26769918 tttgggttaatagtgttttaccccctgtaatataggtcattttcg 26769962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 218
Target Start/End: Original strand, 5154717 - 5154764
Alignment:
Q  172 atttgggttaatagtgtttta-acccctgtaatatatgacattttcgg 218  Q
    ||||||||||||||||||||  |||||||||||||||| |||||||||    
T  5154717 atttgggttaatagtgtttttcacccctgtaatatatgtcattttcgg 5154764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 215
Target Start/End: Complemental strand, 38703359 - 38703320
Alignment:
Q  176 gggttaatagtgttttaacccctgtaatatatgacatttt 215  Q
    ||||||||||||||||| ||||||||||||||| ||||||    
T  38703359 gggttaatagtgttttaccccctgtaatatatgtcatttt 38703320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 218
Target Start/End: Original strand, 25024539 - 25024581
Alignment:
Q  176 gggttaatagtgttttaacccctgtaatatatgacattttcgg 218  Q
    |||||||||||| |||| ||||||||||||||| |||||||||    
T  25024539 gggttaatagtgctttaccccctgtaatatatgtcattttcgg 25024581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 3526537 - 3526578
Alignment:
Q  174 ttgggttaatagtgtttt-aacccctgtaatatatgacattt 214  Q
    |||||||||||||||||| ||||||||||||||||| |||||    
T  3526537 ttgggttaatagtgtttttaacccctgtaatatatgtcattt 3526578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 7731268 - 7731313
Alignment:
Q  174 ttgggttaatagtgtttta-acccctgtaatatatgacattttcgg 218  Q
    ||||||||||||||||||  |||||||||||||||| |||||||||    
T  7731268 ttgggttaatagtgtttttcacccctgtaatatatgtcattttcgg 7731313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 51830354 - 51830399
Alignment:
Q  174 ttgggttaatagtg-ttttaacccctgtaatatatgacattttcgg 218  Q
    |||||||||||||| |||| |||||||||||||||| |||||||||    
T  51830354 ttgggttaatagtgcttttcacccctgtaatatatgccattttcgg 51830399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 216
Target Start/End: Complemental strand, 7015016 - 7014972
Alignment:
Q  173 tttgggttaatagtgtttta-acccctgtaatatatgacattttc 216  Q
    |||||||||||||||||||  |||||||||||||||| |||||||    
T  7015016 tttgggttaatagtgtttttcacccctgtaatatatgtcattttc 7014972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 37585635 - 37585679
Alignment:
Q  175 tgggttaatagtgtttta-acccctgtaatatatgacattttcgg 218  Q
    |||||||||||||||||  |||||||||||||||| |||||||||    
T  37585635 tgggttaatagtgtttttcacccctgtaatatatgtcattttcgg 37585679  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 36525649 - 36525589
Alignment:
Q  176 gggttaatagtgttttaacccctgtaatatatgacattttcggatttatccccgtaaaata 236  Q
    ||||||||||||||||| ||||||||||||| | ||||||||| ||| |||  ||||||||    
T  36525649 gggttaatagtgttttaccccctgtaatataggtcattttcggttttttccatgtaaaata 36525589  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 943841 - 943884
Alignment:
Q  175 tgggttaatagtgttttaacccctgtaatatatgacattttcgg 218  Q
    |||||||||||||||||| | ||||||||||||| |||||||||    
T  943841 tgggttaatagtgttttacctcctgtaatatatgtcattttcgg 943884  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 19272661 - 19272723
Alignment:
Q  175 tgggttaatagtgttttaacccctgtaatatatgacattttcggatttatcccc-gtaaaata 236  Q
    |||||||||||||||||| ||||||||||||| | ||||| ||| |||| |||| ||||||||    
T  19272661 tgggttaatagtgttttatcccctgtaatataggtcatttccggttttaccccctgtaaaata 19272723  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 22846012 - 22846054
Alignment:
Q  175 tgggttaatagtgttttaacccctgtaatatatgacattttcg 217  Q
    |||||||||||||||||| ||||||||||||| | ||||||||    
T  22846012 tgggttaatagtgttttaccccctgtaatataagtcattttcg 22846054  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 38127763 - 38127824
Alignment:
Q  176 gggttaatagtgttttaacccctgtaatatatgacattttcggatttatcccc-gtaaaata 236  Q
    ||||||||||||||||| ||||||||||||| | ||||| ||| |||| |||| ||||||||    
T  38127763 gggttaatagtgttttaccccctgtaatataggtcatttccggttttaccccctgtaaaata 38127824  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 206
Target Start/End: Complemental strand, 24226713 - 24226681
Alignment:
Q  174 ttgggttaatagtgttttaacccctgtaatata 206  Q
    ||||||||||||||||||| |||||||||||||    
T  24226713 ttgggttaatagtgttttaccccctgtaatata 24226681  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 228
Target Start/End: Complemental strand, 28761887 - 28761835
Alignment:
Q  176 gggttaatagtgttttaacccctgtaatatatgacattttcggatttatcccc 228  Q
    |||||||||| |||||| ||||||||||| ||| ||||||||| |||| ||||    
T  28761887 gggttaatagagttttaccccctgtaatacatgccattttcgggtttaccccc 28761835  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 206
Target Start/End: Original strand, 31989348 - 31989380
Alignment:
Q  174 ttgggttaatagtgttttaacccctgtaatata 206  Q
    ||||||||||||||||||| |||||||||||||    
T  31989348 ttgggttaatagtgttttaccccctgtaatata 31989380  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 236
Target Start/End: Complemental strand, 33218703 - 33218639
Alignment:
Q  174 ttgggttaatagtgtttta-acccctgtaatatatgacattttcggatttatcccc-gtaaaata 236  Q
    |||||||||||||||||||  ||||||||||||| | ||||||||| |||| |||| ||||||||    
T  33218703 ttgggttaatagtgttttacccccctgtaatataggtcattttcggttttaccccctgtaaaata 33218639  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 218
Target Start/End: Complemental strand, 34963639 - 34963595
Alignment:
Q  175 tgggttaatagtgtttta-acccctgtaatatatgacattttcgg 218  Q
    |||||||||||||||||  |||||||||||||||| |||||||||    
T  34963639 tgggttaatagtgtttttcacccctgtaatatatgtcattttcgg 34963595  T

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Target: scaffold0004 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 212512 - 212554
Alignment:
Q  175 tgggttaatagtgttttaacccctgtaatatatgacattttcg 217  Q
    |||||||||||||||||| ||||||||||||| | ||||||||    
T  212512 tgggttaatagtgttttaccccctgtaatataggtcattttcg 212554  T

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Target: scaffold0002 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 332067 - 332125
Alignment:
Q  178 gttaatagtgttttaacccctgtaatatatgacattttcggatttatccccgtaaaata 236  Q
    ||||||||||||||| ||||||||||||| | ||||||||| |||  ||| ||||||||    
T  332067 gttaatagtgttttaccccctgtaatataggtcattttcggttttccccctgtaaaata 332125  T

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Target: scaffold0002; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 432775 - 432719
Alignment:
Q  173 tttgggttaatagtgttttaacc-cctgtaatatatgacattttcggatttatcccc 228  Q
    |||||||||||||||||||| || ||||||||||| | ||||||||  |||||||||    
T  432775 tttgggttaatagtgttttaccctcctgtaatataggtcattttcgattttatcccc 432719  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 17158115 - 17158157
Alignment:
Q  176 gggttaatagtgtttta-acccctgtaatatatgacattttcg 217  Q
    ||||||||||||||||| |||||||||||||||| ||||||||    
T  17158115 gggttaatagtgttttatacccctgtaatatatgtcattttcg 17158157  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 10545831 - 10545872
Alignment:
Q  176 gggttaatagtgttttaacccctgtaatatatgacattttcg 217  Q
    ||||||||||||||||| ||||||||||||| | ||||||||    
T  10545831 gggttaatagtgttttaccccctgtaatataggtcattttcg 10545872  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 13462620 - 13462661
Alignment:
Q  176 gggttaatagtgttttaacccctgtaatatatgacattttcg 217  Q
    ||||||||| ||||||| ||||||||||||||| ||||||||    
T  13462620 gggttaataatgttttatcccctgtaatatatgtcattttcg 13462661  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 216
Target Start/End: Complemental strand, 28632055 - 28632011
Alignment:
Q  173 tttgggttaatagtgtttta-acccctgtaatatatgacattttc 216  Q
    |||||||||||||||||||  |||||||||||||||| |||||||    
T  28632055 tttgggttaatagtgtttttcacccctgtaatatatgtcattttc 28632011  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 228
Target Start/End: Original strand, 31656367 - 31656418
Alignment:
Q  176 gggttaatagtgttttaacccctgtaatatatgacattttcggatttatcccc 228  Q
    |||||||||||| |||| ||||||||||||||| |||||| ||||||| ||||    
T  31656367 gggttaatagtgcttta-cccctgtaatatatgtcatttttggatttaccccc 31656418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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