View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15593_low_7 (Length: 420)
Name: NF15593_low_7
Description: NF15593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15593_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 17 - 410
Target Start/End: Complemental strand, 32244628 - 32244238
Alignment:
| Q |
17 |
aatttctactttaattactccatacatctatatatttgagtctgagcaacactgttatggcttaatgaaaactgtaaatgaataaagtagagtgaaaaag |
116 |
Q |
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||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||| |
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| T |
32244628 |
aatttctactttaatcactacatacatctatatatttgagtctgagcaacactgttactgcttaatgaaaactgtaaatgaattaagtaaagtgaaaaag |
32244529 |
T |
|
| Q |
117 |
aagtaatgatatcaacatgtaaagaatcgacgcagaatgcatgggaccatcccatgccatatacatttgttctcattcatttaactgcagtcatgattcc |
216 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32244528 |
aagtaatgatatcaacatgtaaagaatcgacgcagaatgcatgggaccatcccatgccatatacatttgttctcattcatttaactgcagtcatgattcc |
32244429 |
T |
|
| Q |
217 |
atatgtaaagataccaacaaatatacactctgtgatgtctctgtgcacatatatatcttaatgtgatgtgtaggaaattaagaatttataggcatgcatg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32244428 |
atatgtaaagataccaacaaatatacactctgtgatgtctctgtgcacat--atatcttaatgtgatgtgtaggaaattaagaattcataggcatgcatg |
32244331 |
T |
|
| Q |
317 |
ctgaagaatgtcatgaactcagcaacctacactgtgtgacgtgtcccttcctcactcttctcttcttactataaatcaccactccacaggttct |
410 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32244330 |
gtgaagaatgtcatgaact-agcaacctacactgtgtgacgtgtcccttcctcactcttctcttcttactataaatcaccactccacaggttct |
32244238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 17 - 410
Target Start/End: Complemental strand, 32250337 - 32249947
Alignment:
| Q |
17 |
aatttctactttaattactccatacatctatatatttgagtctgagcaacactgttatggcttaatgaaaactgtaaatgaataaagtagagtgaaaaag |
116 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32250337 |
aatttctactttaattactccatacatctatatatttgagtctgagcaacactgttacggcttaatgaaaactgtaaatgaataaagtagagtgaaaaag |
32250238 |
T |
|
| Q |
117 |
aagtaatgatatcaacatgtaaagaatcgacgcagaatgcatgggaccatcccatgccatatacatttgttctcattcatttaactgcagtcatgattcc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
32250237 |
aagtaatgatatcaacatgtaaagaatcgacgcagaatgcatgggaccatcccatgccatatatatttgttctcattcatttaactgcagtcaggattcc |
32250138 |
T |
|
| Q |
217 |
atatgtaaagataccaacaaatatacactctgtgatgtctctgtgcacatatatatcttaatgtgatgtgtaggaaattaagaatttataggcatgcatg |
316 |
Q |
| |
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|||||| |||||| |||||||||||| |||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32250137 |
atatgtgaagatagcaacaaatataccctctgtgatgtctc--tgcacatatctatcataatgtgatgtgtaggaaattaagaattcataggcatgcatg |
32250040 |
T |
|
| Q |
317 |
ctgaagaatgtcatgaactcagcaacctacactgtgtgacgtgtcccttcctcactcttctcttcttactataaatcaccactccacaggttct |
410 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
32250039 |
gtgaagaatgtcatgaact-agcaacctacactgtgtgacgtgtccctttctcacgcttctcttcttactataaatcaccactccacaggttct |
32249947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 265 - 410
Target Start/End: Complemental strand, 32254912 - 32254767
Alignment:
| Q |
265 |
atatatatcttaatgtgatgtgtaggaaattaagaatttataggcatgcatgctgaagaatgtcatgaactcagcaacctacactgtgtgacgtgtccct |
364 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32254912 |
atatatataataatgtgatgtgtaggaaattaagaattcataggcatgcatggtgaagaatgtcatgaacttagcaacctacactgtgtgacgtgtccct |
32254813 |
T |
|
| Q |
365 |
tcctcactcttctcttcttactataaatcaccactccacaggttct |
410 |
Q |
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| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32254812 |
ttctcacgcttctcttcttactataaatcaccactccacaggttct |
32254767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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