View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15593_low_8 (Length: 347)
Name: NF15593_low_8
Description: NF15593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15593_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 20 - 337
Target Start/End: Complemental strand, 1254801 - 1254478
Alignment:
| Q |
20 |
ccattttcacctttactaaaatcaccagctaaatcaatggattttgtctccttgacacttggact------gctttcagaattcaattgtaggcctaata |
113 |
Q |
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| T |
1254801 |
ccattttcacctttactaaaatcaccagctaaatcaatggattttgtcaccttgacacttggacttggattgctttcagaattcagttgtagccctatta |
1254702 |
T |
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| Q |
114 |
tgggttggtcttgttctgatcttcgtctccggcggctttggataaacaaaagtgctaatattgaagctaaaacaaccattgctaccactacaatgacaac |
213 |
Q |
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| T |
1254701 |
tgggttggtcttgttctgatcttcgtcgctggcggctttggataaacaaaagtgctaatattgaagctaaaaccaccatagataccactacaatgacaac |
1254602 |
T |
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| Q |
214 |
tataaggannnnnnngttcttctttccatttccttgagttgagaaagctgaattagtttgcacaatagattttgttggaggtatgttgcaaggattgttc |
313 |
Q |
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| T |
1254601 |
tataaggatttttttgttcttctttccatttccttgagttgagaaaactgaattagtttgcacaatagattttgttggaggtatgttgcaaggattgttc |
1254502 |
T |
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| Q |
314 |
aaaggttttccacataggcctttg |
337 |
Q |
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| T |
1254501 |
aaaggttttccacataggcctttg |
1254478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 273 - 331
Target Start/End: Complemental strand, 1246139 - 1246081
Alignment:
| Q |
273 |
gcacaatagattttgttggaggtatgttgcaaggattgttcaaaggttttccacatagg |
331 |
Q |
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| T |
1246139 |
gcacaatagattttgttggggacatgttgcatggattgctcaaaggttttccacatagg |
1246081 |
T |
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