View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15594_high_2 (Length: 436)
Name: NF15594_high_2
Description: NF15594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15594_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 17 - 420
Target Start/End: Original strand, 40941776 - 40942179
Alignment:
| Q |
17 |
aactatctcctattgatgttttgaaaaaactggatgnnnnnnngttctgaattgcagtggaaaggttgtaaatatgatgatatgcttacatttgaatttt |
116 |
Q |
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| T |
40941776 |
aactatctcctattgatgttttgaaaaaactggatgcttttttgttctgaattgcagtggaaaggttgtaaatatgatgatatgcttacatttgaagttt |
40941875 |
T |
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| Q |
117 |
gattggttagatgggttctgtgtggaatttgtgtaaggaccttcgcatcttcctgtgctttcatatcaacaatatgtttcaaagttataatcttatgaaa |
216 |
Q |
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| T |
40941876 |
gattggttagatgggttctgtgtggaatttgtgtaaggaccttcgcatcttcctgtgctgtcatatcaacaatatgtttcaaagttataatcttatgaaa |
40941975 |
T |
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| Q |
217 |
ttatttcaaaatatatcatcatcacatcatgtgcttaaaaatgaaactctggggacaatatattgcttcaggctattgttttgaaggtactgcttatatt |
316 |
Q |
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| T |
40941976 |
ttatttcaaaatatatcatcatcacatcatgtgcttaaaaatgaaactctggggacaatatattgcttcaggctattgttttgaaggtaatgcttatatt |
40942075 |
T |
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| Q |
317 |
tacaggcacttaaaaagtttggtgtagaaaaatttgaccctacaaatgagccctttgatccacataggcataacgcagtcttcaaagttcctgacggttc |
416 |
Q |
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| T |
40942076 |
tacaggcacttaaaaagtttggtgtagaaaaatttgaccctacaaatgagccctttgatccacataggcataacgcagtcttcaaagttcctgacggttc |
40942175 |
T |
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| Q |
417 |
caag |
420 |
Q |
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|||| |
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| T |
40942176 |
caag |
40942179 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 389
Target Start/End: Original strand, 21507090 - 21507163
Alignment:
| Q |
316 |
ttacaggcacttaaaaagtttggtgtagaaaaatttgaccctacaaatgagccctttgatccacataggcataa |
389 |
Q |
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| T |
21507090 |
ttacaggtacttaaaaagcacggtgttgaaaaatatgatcctacaaatgaaccatttgatccaaacaggcataa |
21507163 |
T |
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